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BRAIN SUBSTANTIA NIGRA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SUBSTANTIA NIGRA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:47.8 nTPM
GTEx:112.2 nTPM
FANTOM5:43.0 Scaled Tags Per Million

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Avg nTPM 47.8
Sample id Sample description nTPM
Substantia nigra
nTPM: 47.8
2699 Male, age 18, unknown 58.0
2583 Male, age 75, right hemisphere 55.8
2409 Female, age 72, unknown 54.8
1851 Male, age 51, unknown 52.0
2590 Female, age 75, unknown 48.9
1889 Female, age 72, unknown 45.2
2665 Male, age 74, both hemispheres 45.2
1941 Male, age 53, unknown 40.9
1916 Female, age 42, unknown 39.7
2241 Male, age 72, unknown 37.7

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 112.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 112.2
Samples: 139

Max nTPM: 316.2
Min nTPM: 33.2
Std nTPM: 46.4
Median nTPM: 105.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 316.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 269.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 262.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 224.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 210.5
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 203.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 197.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 193.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 192.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 191.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 182.0
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 170.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 169.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 169.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 165.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 165.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 163.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 161.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 157.3
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 156.2
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 148.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 148.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 146.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 146.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 145.0
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 144.7
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 143.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 143.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 142.9
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 142.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 140.9
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 140.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 139.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 138.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 138.1
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 137.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 135.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 135.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 134.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 132.0
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 130.0
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 129.8
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 129.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 127.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 126.0
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 124.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 123.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 119.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 119.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 119.2
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 118.6
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 118.5
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 118.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 116.0
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 115.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 113.5
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 113.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 113.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 113.1
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 112.7
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 111.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 111.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 109.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 109.2
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 109.0
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 108.2
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 107.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 107.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 106.3
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 105.9
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 105.0
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 104.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 101.7
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 101.6
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 101.1
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 99.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 99.2
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 98.9
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 98.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 97.3
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 95.5
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 95.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 95.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 95.0
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 94.9
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 94.5
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 94.0
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 93.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 91.9
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 91.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 91.1
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 90.2
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 89.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 86.6
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 86.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 85.9
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 84.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 83.7
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 83.3
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 83.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 82.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 81.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 81.6
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 81.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 80.9
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 80.1
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 79.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 79.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 79.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 79.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 78.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 78.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 78.4
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 77.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 76.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 74.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 72.9
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 71.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 69.1
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 68.4
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 68.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 66.7
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 65.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 63.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 63.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 61.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 59.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 57.9
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 56.5
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 55.1
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 54.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 51.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 47.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 46.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 40.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 38.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 37.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 33.6
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 33.2
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SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 43.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.0
FF:10158-103A5 76 years, female 43.0

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