BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:15.8 nTPM
HPA:15.8 nTPM
GTEx:14.0 nTPM
FANTOM5:28.3 Scaled Tags Per Million
Pig:13.0 nTPM
Mouse:11.9 nTPM
Allen mouse:1.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 15.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 13.0
1854 Male, age 80, left hemisphere 13.5
1857 Female, age 85, left hemisphere 13.5
2290 Female, age 72, unknown 13.4
1781 Male, age 74, unknown 13.2
2846 Female, age 79, unknown 12.8
2288 Male, age 75, left hemisphere 12.7
2289 Male, age 61, right hemisphere 12.3
2481 Female, age 94, left hemisphere 12.2
Claustrum
nTPM: 13.1
2568 Male, age 61, both hemispheres 14.8
1956 Male, age 74, unknown 13.8
2198 Male, age 80, both hemispheres 13.3
2292 Female, age 85, both hemispheres 13.1
2645 Female, age 72, unknown 13.1
2284 Female, age 91, both hemispheres 12.7
2491 Male, age 75, both hemispheres 12.5
2392 Female, age 94, both hemispheres 12.4
2196 Female, age 79, unknown 12.2
Globus pallidus, externus
nTPM: 15.8
2567 Female, age 72, unknown 17.0
1996 Male, age 80, right hemisphere 16.4
2772 Female, age 79, unknown 16.4
2646 Male, age 61, right hemisphere 16.0
2395 Male, age 75, both hemispheres 13.3
Globus pallidus, internus
nTPM: 15.0
2566 Female, age 72, unknown 16.4
1818 Male, age 74, unknown 15.6
2287 Male, age 75, right hemisphere 15.2
2037 Male, age 80, right hemisphere 15.0
2111 Female, age 85, right hemisphere 14.6
2778 Female, age 91, both hemispheres 14.3
2483 Female, age 94, right hemisphere 14.2
Nucleus accumbens
nTPM: 12.8
2732 Male, age 80, right hemisphere 14.0
1783 Male, age 74, unknown 13.4
1856 Female, age 91, right hemisphere 13.4
2286 Male, age 75, left hemisphere 13.1
2698 Female, age 72, unknown 12.8
2391 Female, age 94, left hemisphere 12.6
1806 Female, age 85, left hemisphere 12.4
2824 Male, age 61, right hemisphere 10.9
Nucleus basalis of Meynert
nTPM: 14.4
2569 Male, age 61, both hemispheres 17.8
2821 Male, age 75, both hemispheres 13.7
2393 Male, age 80, right hemisphere 13.5
2484 Female, age 94, left hemisphere 12.8
Nucleus of the diagonal band
nTPM: 13.7
2029 Male, age 61, right hemisphere 14.4
2195 Female, age 85, both hemispheres 13.9
1812 Female, age 91, both hemispheres 13.8
2775 Male, age 80, right hemisphere 13.3
1979 Male, age 74, unknown 13.0
Olfactory tubercle
nTPM: 13.8
2487 Female, age 94, left hemisphere 14.3
1998 Female, age 91, both hemispheres 13.9
2856 Male, age 75, right hemisphere 13.6
1846 Male, age 80, right hemisphere 13.5
Putamen
nTPM: 12.9
2647 Male, age 75, left hemisphere 14.4
2482 Female, age 94, left hemisphere 13.5
1937 Female, age 91, right hemisphere 13.0
1838 Male, age 80, right hemisphere 12.9
2489 Female, age 72, unknown 12.8
2466 Female, age 79, unknown 12.0
1829 Male, age 74, unknown 11.7
Septal nuclei
nTPM: 13.7
2394 Male, age 61, left hemisphere 16.1
2059 Female, age 85, both hemispheres 13.7
1960 Male, age 74, unknown 13.6
2199 Male, age 80, right hemisphere 13.6
2629 Female, age 94, right hemisphere 13.4
2009 Female, age 91, both hemispheres 12.7
2031 Female, age 72, unknown 12.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 14.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 13.8
Samples: 246

Max nTPM: 24.3
Min nTPM: 7.4
Std nTPM: 2.1
Median nTPM: 13.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 24.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 19.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 19.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 18.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 18.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 18.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 18.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 18.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 18.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 18.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 17.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 13.8
Samples: 246

Max nTPM: 26.1
Min nTPM: 5.6
Std nTPM: 2.5
Median nTPM: 13.9
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 26.1
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 24.2
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 20.6
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 19.5
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 19.3
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 18.4
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 18.2
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 17.9
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 17.9
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 17.9
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 17.7
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Brain - Putamen (basal ganglia)
Average nTPM: 14.0
Samples: 205

Max nTPM: 32.3
Min nTPM: 7.3
Std nTPM: 2.6
Median nTPM: 14.1
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 32.3
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 21.2
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 20.1
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 19.1
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 18.8
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 18.8
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 18.8
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 18.7
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 18.6
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 17.8
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 17.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 28.3
FF:10164-103B2 76 years, female 28.3
Globus pallidus
Scaled Tags Per Million: 24.4
FF:10161-103A8 76 years, female 33.0
FF:10175-103C4 60 years, female 15.7
Nucleus accumbens
Scaled Tags Per Million: 24.0
FF:10037-101F1 23-56 years, mixed 24.0
Putamen
Scaled Tags Per Million: 17.5
FF:10176-103C5 60 years, female 17.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 13.0
Pig sample Sample description nTPM
Caudate
nTPM: 10.6
Samples: 4

Max nTPM: 11.7
Min nTPM: 9.2
Sample A Female 9.2
Sample B Female 11.7
Sample C Male 11.4
Sample D Male 9.9
Putamen
nTPM: 11.3
Samples: 4

Max nTPM: 12.9
Min nTPM: 9.4
Sample A Female 12.2
Sample B Female 9.4
Sample C Male 10.8
Sample D Male 12.9
Septum
nTPM: 13.1
Samples: 4

Max nTPM: 16.5
Min nTPM: 11.6
Sample A Female 12.0
Sample B Female 11.6
Sample C Male 16.5
Sample D Male 12.1
Ventral pallidum
nTPM: 12.6
Samples: 4

Max nTPM: 17.3
Min nTPM: 9.7
Sample A Female 9.7
Sample B Female 11.9
Sample C Male 17.3
Sample D Male 11.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 11.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 8.7
Samples: 4

Max nTPM: 11.2
Min nTPM: 6.7
Sample A Male 9.5
Sample B Male 11.2
Sample C Female 6.7
Sample D Female 7.2
Septum
nTPM: 11.9
Samples: 4

Max nTPM: 13.1
Min nTPM: 11.1
Sample A Male 13.1
Sample B Male 11.8
Sample C Female 11.5
Sample D Female 11.1
Ventral forebrain
nTPM: 9.3
Samples: 4

Max nTPM: 10.1
Min nTPM: 8.6
Sample A Male 8.6
Sample B Male 10.1
Sample C Female 9.8
Sample D Female 8.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.1
70445395 Antisense, RP_050614_03_F11, Mouse strain C57BL/6J (56 days, male) 1.1
Pallidum
Expression energy: 0.7
70445395 Antisense, RP_050614_03_F11, Mouse strain C57BL/6J (56 days, male) 0.7

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