We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SLAIN1
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • SLAIN1
BRAIN WHITE MATTER Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
WHITE MATTER - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:412.9 nTPM
HPA:412.9 nTPM
FANTOM5:597.6 Scaled Tags Per Million
Pig:278.0 nTPM
Mouse:201.8 nTPM

WHITE MATTER - Annotated protein expression
Pending normal tissue analysis

WHITE MATTER - HPA Brain RNA-seq
Max nTPM 412.9
Sample id Sample description nTPM
Angular gyrus (white matter)
nTPM: 327.2
1920 Male, age 76, both hemispheres 327.2
Anterior funiculus (white matter)
nTPM: 230.5
2734 Male, age 80, both hemispheres 261.1
2193 Male, age 75, both hemispheres 221.8
2818 Female, age 79, both hemispheres 221.6
2819 Male, age 47, both hemispheres 217.5
Area striata (white matter)
nTPM: 288.2
2258 Female, age 91, left hemisphere 288.2
Cerebellar white matter
nTPM: 362.0
1864 Male, age 80, left hemisphere 421.1
1837 Male, age 76, left hemisphere 409.7
2174 Male, age 61, right hemisphere 405.0
1931 Female, age 91, left hemisphere 374.8
2105 Male, age 74, right hemisphere 316.1
2773 Female, age 85, right hemisphere 245.3
Corpus callosum, genu (white matter)
nTPM: 363.9
1887 Male, age 76, left hemisphere 582.5
1934 Male, age 61, right hemisphere 392.0
1886 Female, age 67, right hemisphere 391.0
1849 Female, age 91, right hemisphere 356.7
1885 Female, age 94, left hemisphere 239.7
2771 Male, age 75, left hemisphere 221.2
Corpus callosum, splenium (white matter)
nTPM: 355.9
1946 Male, age 76, left hemisphere 506.0
2238 Female, age 94, right hemisphere 326.7
2847 Female, age 67, right hemisphere 299.4
2104 Male, age 75, left hemisphere 291.3
Dorsal funiculus (white matter)
nTPM: 243.1
2810 Male, age 90, both hemispheres 288.2
2817 Male, age 47, both hemispheres 251.0
2128 Male, age 75, both hemispheres 228.5
2064 Female, age 79, both hemispheres 224.9
2812 Male, age 66, both hemispheres 222.8
Lateral funiculus (white matter)
nTPM: 210.8
2094 Female, age 79, both hemispheres 253.4
2099 Male, age 90, both hemispheres 251.5
2192 Male, age 75, both hemispheres 189.0
2294 Male, age 66, both hemispheres 149.4
Occipital cortex (white matter)
nTPM: 249.3
2259 Male, age 75, midline 272.1
2257 Female, age 67, both hemispheres 226.5
Parahippocampal cortex (white matter)
nTPM: 241.5
2157 Female, age 91, both hemispheres 241.5
Parieto-temporal junction (white matter)
nTPM: 398.4
2121 Male, age 76, left hemisphere 580.1
1935 Female, age 94, right hemisphere 431.4
2774 Male, age 61, right hemisphere 424.3
2770 Female, age 91, right hemisphere 380.9
1999 Female, age 67, right hemisphere 303.8
2469 Male, age 75, right hemisphere 269.8
Somatomor cortex, precentral gyrus (white matter)
nTPM: 194.7
2439 Male, age 75, right hemisphere 194.7
Somatosensory cortex, postcentral gyrus, ventral (white matter)
nTPM: 192.6
2623 Male, age 75, right hemisphere 192.6
Temporal white matter
nTPM: 412.9
2523 Female, age 94, left hemisphere 494.6
2736 Female, age 91, right hemisphere 467.6
1801 Male, age 76, left hemisphere 404.5
2524 Female, age 85, left hemisphere 374.0
2254 Male, age 75, right hemisphere 324.0

WHITE MATTER - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 597.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Corpus callosum
Scaled Tags Per Million: 597.6
FF:10042-101F6 24-68 years, mixed 597.6

WHITE MATTER - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 278.0
Pig sample Sample description nTPM
Corpus callosum
nTPM: 278.0
Samples: 4

Max nTPM: 296.5
Min nTPM: 253.9
Sample A Female 276.6
Sample B Female 296.5
Sample C Male 253.9
Sample D Male 284.9

WHITE MATTER - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 201.8
Mouse sample Sample description nTPM
Corpus callosum
nTPM: 201.8
Samples: 3

Max nTPM: 227.2
Min nTPM: 186.6
Sample A Male 227.2
Sample B Male 191.6
Sample D Female 186.6

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.