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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:23.9 nTPM
HPA:23.9 nTPM
FANTOM5:54.4 Scaled Tags Per Million
Pig:73.1 nTPM
Allen mouse:0.2 Expression energy

MEDULLA OBLONGATA - Annotated protein expression
Pending normal tissue analysis

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max nTPM 23.9
Sample id Sample description nTPM
Area postrema
nTPM: 17.2
2799 Male, age 61, both hemispheres 21.7
2306 Male, age 80, both hemispheres 20.3
2054 Male, age 76, both hemispheres 9.5
Cuneate nuclei
nTPM: 16.1
2381 Male, age 80, both hemispheres 19.8
2376 Male, age 61, both hemispheres 18.1
2131 Male, age 76, both hemispheres 10.5
Dorsal medullary reticular nucleus
nTPM: 14.7
2373 Male, age 61, both hemispheres 17.0
2040 Female, age 85, both hemispheres 13.7
2088 Male, age 76, both hemispheres 13.4
Dorsal motor vagal complex
nTPM: 11.8
2185 Male, age 76, both hemispheres 17.4
2797 Male, age 61, both hemispheres 15.1
2807 Female, age 85, both hemispheres 12.8
2000 Male, age 74, unknown 12.5
2133 Female, age 91, both hemispheres 10.7
2643 Male, age 74, both hemispheres 9.5
2813 Female, age 72, unknown 9.1
2844 Male, age 55, unknown 7.1
Gigantocellular reticular nuclei, medullary
nTPM: 16.8
2314 Male, age 61, both hemispheres 24.5
2387 Female, age 91, both hemispheres 20.7
1876 Female, age 85, both hemispheres 18.2
2310 Male, age 80, both hemispheres 15.1
2022 Male, age 76, right hemisphere 12.5
2462 Male, age 74, both hemispheres 9.8
Gigantocellular reticular nuclei, pars
nTPM: 13.1
2336 Male, age 61, both hemispheres 15.1
2330 Male, age 80, both hemispheres 14.9
2706 Male, age 80, both hemispheres 14.2
2084 Female, age 85, both hemispheres 10.9
2168 Male, age 76, both hemispheres 10.7
Inferior olive
nTPM: 17.9
2178 Male, age 61, both hemispheres 23.1
2379 Male, age 80, both hemispheres 17.9
2085 Female, age 85, both hemispheres 17.1
2563 Male, age 74, both hemispheres 16.3
2628 Female, age 91, both hemispheres 15.1
Lateral medullary reticular nucleus
nTPM: 17.9
2305 Male, age 74, both hemispheres 23.8
2852 Male, age 80, both hemispheres 19.1
2190 Female, age 85, both hemispheres 17.5
2804 Female, age 91, both hemispheres 17.1
2374 Male, age 61, both hemispheres 16.8
2044 Male, age 76, both hemispheres 13.3
Medial vestibular nucleus
nTPM: 13.6
2803 Female, age 91, both hemispheres 18.1
2801 Male, age 74, both hemispheres 17.1
2093 Male, age 80, both hemispheres 15.0
2624 Male, age 61, both hemispheres 11.8
2743 Female, age 85, both hemispheres 11.2
2134 Male, age 76, both hemispheres 8.3
Motor hypoglossal nucleus
nTPM: 12.9
2125 Female, age 91, both hemispheres 17.2
2132 Female, age 85, both hemispheres 16.2
2182 Male, age 80, both hemispheres 13.8
2461 Male, age 61, both hemispheres 10.5
2277 Male, age 76, both hemispheres 6.9
Nucleus ambiguus
nTPM: 14.4
2071 Male, age 76, both hemispheres 22.3
2096 Female, age 85, both hemispheres 6.5
Nucleus cuneatus
nTPM: 16.8
2380 Male, age 80, both hemispheres 26.2
2808 Female, age 85, both hemispheres 23.0
2100 Male, age 76, both hemispheres 13.6
2805 Female, age 91, both hemispheres 13.5
2562 Male, age 61, both hemispheres 12.4
2564 Male, age 74, both hemispheres 12.1
Nucleus gracilis
nTPM: 18.7
2382 Male, age 80, both hemispheres 25.0
2299 Female, age 85, both hemispheres 17.4
2627 Male, age 74, both hemispheres 13.8
Nucleus raphe magnus
nTPM: 12.3
2459 Female, age 91, both hemispheres 16.8
2051 Male, age 76, both hemispheres 15.4
2328 Male, age 80, both hemispheres 15.1
2455 Male, age 74, both hemispheres 12.8
2160 Male, age 61, both hemispheres 7.2
2172 Female, age 85, both hemispheres 6.3
Nucleus raphe obscurus
nTPM: 23.9
2845 Female, age 85, midline 28.0
2142 Male, age 76, midline 24.7
2800 Male, age 61, midline 19.0
Nucleus raphe pallidus
nTPM: 22.8
2145 Male, age 76, midline 28.0
1924 Male, age 61, midline 23.5
2183 Male, age 80, midline 16.9
Nucleus tractus solitarii
nTPM: 9.7
2144 Female, age 91, right hemisphere 12.8
2656 Male, age 76, both hemispheres 8.8
2191 Female, age 85, both hemispheres 8.5
2307 Male, age 80, both hemispheres 8.5
Parvicellular reticular nuclei
nTPM: 14.4
2095 Male, age 76, both hemispheres 16.6
2119 Male, age 80, both hemispheres 16.5
2558 Male, age 74, both hemispheres 10.0
Parvicellular reticular nuclei, medullary
nTPM: 12.1
2189 Female, age 91, both hemispheres 13.2
2181 Male, age 80, left hemisphere 12.4
2091 Female, age 85, both hemispheres 10.7
Peritrigeminal nucleus
nTPM: 15.4
2136 Male, age 76, both hemispheres 16.4
2179 Male, age 61, both hemispheres 16.3
2067 Female, age 85, both hemispheres 13.5
Prepositus hypoglossal nucleus
nTPM: 15.2
2855 Female, age 85, right hemisphere 20.7
2086 Male, age 80, both hemispheres 9.8
Spinal trigeminal nucleus, caudal
nTPM: 15.5
2312 Male, age 61, both hemispheres 21.4
2308 Male, age 80, both hemispheres 17.0
2390 Female, age 91, both hemispheres 14.3
2447 Male, age 76, both hemispheres 13.8
2642 Male, age 74, both hemispheres 10.7
Spinal trigeminal nucleus, interpolar
nTPM: 12.3
2033 Male, age 80, both hemispheres 14.2
2386 Female, age 85, both hemispheres 13.8
2389 Female, age 91, both hemispheres 13.4
2066 Male, age 76, right hemisphere 11.2
2625 Male, age 61, both hemispheres 9.0
Spinal vestibular nucleus
nTPM: 15.7
2806 Female, age 85, both hemispheres 18.8
2384 Male, age 74, both hemispheres 17.2
2748 Male, age 76, both hemispheres 17.2
2186 Female, age 91, both hemispheres 15.4
2780 Male, age 80, both hemispheres 12.6
2796 Male, age 61, both hemispheres 12.6
Ventral medullary reticular nucleus
nTPM: 16.9
2372 Male, age 61, both hemispheres 20.8
2060 Male, age 76, both hemispheres 13.0
Ventrolateral medulla, A1-C1 cell groups
nTPM: 17.1
2118 Male, age 80, both hemispheres 19.6
2180 Male, age 61, both hemispheres 19.3
2302 Female, age 91, both hemispheres 16.9
2741 Female, age 85, both hemispheres 15.1
1986 Male, age 76, both hemispheres 14.6

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 54.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 54.4
FF:10038-101F2 18-64 years, mixed 63.0
FF:10155-103A2 76 years, female 53.4
FF:10174-103C3 60 years, female 47.0

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 73.1
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 73.2
Samples: 4

Max nTPM: 103.1
Min nTPM: 51.6
Sample A Female 78.9
Sample B Female 51.6
Sample C Male 59.0
Sample D Male 103.1

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 0.2
633686 Antisense, RP_040907_02_B06, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.