BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:4.3 nTPM
HPA:4.3 nTPM
GTEx:2.2 nTPM
FANTOM5:16.3 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 4.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.0
2288 Male, age 75, left hemisphere 3.5
2290 Female, age 72, unknown 3.4
2846 Female, age 79, unknown 3.4
2289 Male, age 61, right hemisphere 3.2
1854 Male, age 80, left hemisphere 2.9
2481 Female, age 94, left hemisphere 2.9
1781 Male, age 74, unknown 2.3
1857 Female, age 85, left hemisphere 2.1
Claustrum
nTPM: 2.9
2392 Female, age 94, both hemispheres 4.4
2292 Female, age 85, both hemispheres 3.5
2284 Female, age 91, both hemispheres 3.1
2645 Female, age 72, unknown 2.9
1956 Male, age 74, unknown 2.8
2198 Male, age 80, both hemispheres 2.5
2568 Male, age 61, both hemispheres 2.5
2196 Female, age 79, unknown 2.3
2491 Male, age 75, both hemispheres 2.2
Globus pallidus, externus
nTPM: 3.3
2395 Male, age 75, both hemispheres 4.4
2567 Female, age 72, unknown 4.0
2646 Male, age 61, right hemisphere 3.4
1996 Male, age 80, right hemisphere 2.5
2772 Female, age 79, unknown 2.4
Globus pallidus, internus
nTPM: 4.3
2111 Female, age 85, right hemisphere 7.0
2778 Female, age 91, both hemispheres 5.2
2566 Female, age 72, unknown 4.7
2287 Male, age 75, right hemisphere 4.1
2037 Male, age 80, right hemisphere 3.6
2483 Female, age 94, right hemisphere 2.9
1818 Male, age 74, unknown 2.6
Nucleus accumbens
nTPM: 3.2
2391 Female, age 94, left hemisphere 5.2
2824 Male, age 61, right hemisphere 4.5
2286 Male, age 75, left hemisphere 3.9
2698 Female, age 72, unknown 3.8
2732 Male, age 80, right hemisphere 3.3
1806 Female, age 85, left hemisphere 1.8
1856 Female, age 91, right hemisphere 1.7
1783 Male, age 74, unknown 1.5
Nucleus basalis of Meynert
nTPM: 2.9
2393 Male, age 80, right hemisphere 3.7
2484 Female, age 94, left hemisphere 3.5
2821 Male, age 75, both hemispheres 2.6
2569 Male, age 61, both hemispheres 1.6
Nucleus of the diagonal band
nTPM: 2.4
2195 Female, age 85, both hemispheres 3.4
1979 Male, age 74, unknown 3.0
2029 Male, age 61, right hemisphere 2.4
2775 Male, age 80, right hemisphere 2.4
1812 Female, age 91, both hemispheres 0.7
Olfactory tubercle
nTPM: 2.2
2487 Female, age 94, left hemisphere 2.8
2856 Male, age 75, right hemisphere 2.3
1846 Male, age 80, right hemisphere 1.9
1998 Female, age 91, both hemispheres 1.9
Putamen
nTPM: 3.2
2482 Female, age 94, left hemisphere 4.3
2466 Female, age 79, unknown 3.8
1829 Male, age 74, unknown 3.7
2489 Female, age 72, unknown 3.3
2647 Male, age 75, left hemisphere 2.8
1937 Female, age 91, right hemisphere 2.6
1838 Male, age 80, right hemisphere 2.0
Septal nuclei
nTPM: 2.5
2059 Female, age 85, both hemispheres 3.0
2199 Male, age 80, right hemisphere 3.0
2394 Male, age 61, left hemisphere 3.0
2009 Female, age 91, both hemispheres 2.5
2629 Female, age 94, right hemisphere 2.4
1960 Male, age 74, unknown 1.8
2031 Female, age 72, unknown 1.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 2.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 2.2
Samples: 246

Max nTPM: 5.3
Min nTPM: 0.4
Std nTPM: 0.7
Median nTPM: 2.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 5.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 4.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 4.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 4.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 4.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 4.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 4.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 3.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 3.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 3.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 3.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 1.9
Samples: 246

Max nTPM: 4.3
Min nTPM: 0.6
Std nTPM: 0.6
Median nTPM: 1.8
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 4.3
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 4.3
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 3.5
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 3.4
GTEX-1HGF4-0011-R6a-SM-A96S1 60-69 years, male 3.4
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 3.3
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 3.3
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 3.3
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 3.2
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 3.1
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 3.1
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Brain - Putamen (basal ganglia)
Average nTPM: 1.9
Samples: 205

Max nTPM: 5.4
Min nTPM: 0.5
Std nTPM: 0.6
Median nTPM: 1.9
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 5.4
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 3.8
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 3.7
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 3.4
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 3.4
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 3.2
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 3.2
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 3.2
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 3.0
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 3.0
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 3.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 15.7
FF:10164-103B2 76 years, female 15.7
Globus pallidus
Scaled Tags Per Million: 16.3
FF:10161-103A8 76 years, female 19.3
FF:10175-103C4 60 years, female 13.4
Nucleus accumbens
Scaled Tags Per Million: 13.0
FF:10037-101F1 23-56 years, mixed 13.0
Putamen
Scaled Tags Per Million: 10.5
FF:10176-103C5 60 years, female 10.5

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The Human Protein Atlas

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