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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:125.8 nTPM
HPA:125.8 nTPM
GTEx:167.5 nTPM
FANTOM5:106.3 Scaled Tags Per Million
Pig:22.0 nTPM
Mouse:211.3 nTPM
Allen mouse:1.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 125.8
Sample id Sample description nTPM
Amygdala
nTPM: 116.0
2814 Male, age 76, right hemisphere 123.4
1987 Female, age 91, left hemisphere 117.5
2517 Female, age 94, left hemisphere 116.2
2695 Female, age 67, right hemisphere 112.1
2514 Male, age 75, right hemisphere 111.1
Basal amygdala
nTPM: 124.6
2243 Female, age 91, right hemisphere 139.3
2110 Male, age 80, left hemisphere 128.2
2609 Male, age 75, right hemisphere 124.2
2685 Female, age 94, left hemisphere 122.5
1955 Male, age 76, both hemispheres 118.1
2827 Female, age 67, right hemisphere 115.6
Central amygdala
nTPM: 122.3
2826 Female, age 94, left hemisphere 135.8
2239 Male, age 80, left hemisphere 126.4
1905 Male, age 76, both hemispheres 124.2
2701 Female, age 91, right hemisphere 113.0
2515 Male, age 75, right hemisphere 112.2
Corticomedial amygdala
nTPM: 125.8
2242 Female, age 91, right hemisphere 140.8
2829 Male, age 80, left hemisphere 134.9
2535 Female, age 67, right hemisphere 133.0
2429 Female, age 94, left hemisphere 119.0
2240 Male, age 76, both hemispheres 115.4
2428 Male, age 75, right hemisphere 111.6
Lateral amygdala
nTPM: 119.8
2534 Female, age 94, left hemisphere 141.3
1883 Male, age 76, both hemispheres 121.0
2516 Male, age 75, right hemisphere 119.9
2255 Female, age 91, right hemisphere 112.9
2256 Male, age 80, left hemisphere 112.0
2830 Female, age 67, right hemisphere 111.8
Stria terminalis, bed nucleus
nTPM: 122.5
1974 Female, age 91, both hemispheres 134.2
2486 Female, age 94, both hemispheres 117.4
2201 Male, age 74, unknown 115.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 167.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 167.5
Samples: 152

Max nTPM: 442.4
Min nTPM: 74.2
Std nTPM: 58.7
Median nTPM: 157.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 442.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 388.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 378.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 373.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 318.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 305.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 271.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 269.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 266.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 255.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 249.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 246.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 246.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 241.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 232.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 229.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 228.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 226.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 224.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 222.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 216.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 215.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 214.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 214.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 212.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 211.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 206.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 204.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 201.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 201.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 200.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 200.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 198.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 197.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 196.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 195.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 193.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 191.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 189.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 185.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 185.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 183.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 183.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 182.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 178.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 178.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 177.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 177.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 176.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 175.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 175.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 174.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 174.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 173.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 172.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 171.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 168.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 167.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 167.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 167.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 166.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 165.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 165.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 164.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 164.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 164.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 164.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 163.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 162.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 162.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 162.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 162.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 160.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 159.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 159.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 157.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 157.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 155.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 155.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 155.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 155.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 154.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 154.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 154.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 152.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 152.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 151.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 151.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 151.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 149.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 149.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 148.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 148.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 147.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 146.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 145.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 144.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 143.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 143.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 141.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 139.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 139.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 139.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 137.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 136.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 136.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 136.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 135.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 135.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 134.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 132.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 132.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 131.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 131.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 131.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 131.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 130.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 130.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 130.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 129.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 128.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 127.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 123.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 123.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 122.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 121.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 119.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 118.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 118.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 117.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 116.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 113.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 113.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 113.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 113.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 111.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 109.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 107.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 107.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 97.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 95.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 94.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 93.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 92.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 91.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 91.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 91.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 90.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 89.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 85.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 81.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 74.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 106.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 106.3
FF:10151-102I7 76 years, female 106.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 22.0
Pig sample Sample description nTPM
Amygdala
nTPM: 22.0
Samples: 4

Max nTPM: 30.3
Min nTPM: 17.4
Sample A Female 30.3
Sample B Female 17.4
Sample C Male 20.7
Sample D Male 19.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 211.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 211.3
Samples: 4

Max nTPM: 233.2
Min nTPM: 192.9
Sample A Male 219.4
Sample B Male 192.9
Sample C Female 233.2
Sample D Female 199.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.3
71496300 Antisense, RP_050913_04_C05, Mouse strain C57BL/6J (56 days, male) 1.3

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