HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:4.3 nTPM
HPA:4.3 nTPM
GTEx:13.5 nTPM
FANTOM5:27.1 Scaled Tags Per Million
Pig:19.9 nTPM
Mouse:12.4 nTPM
Allen mouse:3.0 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 4.3
Sample id Sample description nTPM
Hippocampus
nTPM: 3.9
2148 Female, age 91, left hemisphere 4.5
2529 Female, age 94, left hemisphere 4.5
1898 Male, age 80, left hemisphere 4.4
2621 Female, age 67, right hemisphere 3.6
1911 Female, age 85, right hemisphere 3.3
1855 Male, age 76, left hemisphere 3.2
Dentate gyrus
nTPM: 3.6
2010 Male, age 76, both hemispheres 4.9
2530 Female, age 94, left hemisphere 4.3
2531 Female, age 67, both hemispheres 3.8
2528 Male, age 74, both hemispheres 3.7
1927 Female, age 91, both hemispheres 2.8
2246 Female, age 85, both hemispheres 2.3
Entorhinal gyrus
nTPM: 4.3
2117 Female, age 91, right hemisphere 5.8
2686 Male, age 75, right hemisphere 5.7
1787 Male, age 76, left hemisphere 4.1
2613 Female, age 94, left hemisphere 4.1
2764 Male, age 80, right hemisphere 3.4
1938 Female, age 85, left hemisphere 2.7
Hippocampus, CA1
nTPM: 2.8
2749 Male, age 80, left hemisphere 3.9
2527 Male, age 74, both hemispheres 3.3
1873 Female, age 85, both hemispheres 2.8
2045 Male, age 76, both hemispheres 2.5
2082 Female, age 91, right hemisphere 1.7
Hippocampus, CA2
nTPM: 3.4
1940 Female, age 85, left hemisphere 4.7
2249 Male, age 74, both hemispheres 4.1
2437 Female, age 94, left hemisphere 4.0
1963 Male, age 80, left hemisphere 2.7
2113 Female, age 91, right hemisphere 2.6
1892 Male, age 76, both hemispheres 2.1
Hippocampus, CA3
nTPM: 3.2
2861 Female, age 67, both hemispheres 4.7
2620 Female, age 94, left hemisphere 3.7
1867 Male, age 76, both hemispheres 3.1
1891 Female, age 85, both hemispheres 3.0
2137 Male, age 80, left hemisphere 2.9
2436 Male, age 74, both hemispheres 2.0
Parahippocampal cortex
nTPM: 3.3
2250 Female, age 67, right hemisphere 4.3
1990 Female, age 91, right hemisphere 4.2
2018 Male, age 76, both hemispheres 4.0
2622 Female, age 67, right hemisphere 3.9
2245 Female, age 91, both hemispheres 3.4
2532 Female, age 72, left hemisphere 3.2
2692 Male, age 74, both hemispheres 3.1
1933 Female, age 85, both hemispheres 3.0
2693 Female, age 94, both hemispheres 2.5
1850 Male, age 80, both hemispheres 1.5
Perirhinal gyrus
nTPM: 2.3
2521 Female, age 94, right hemisphere 3.2
1847 Female, age 91, left hemisphere 2.7
1794 Male, age 80, right hemisphere 2.1
1841 Female, age 85, right hemisphere 1.8
2848 Male, age 76, right hemisphere 1.8
Subiculum
nTPM: 3.8
2042 Male, age 76, both hemispheres 4.6
2729 Female, age 91, right hemisphere 4.6
2619 Male, age 74, both hemispheres 4.2
1901 Male, age 80, both hemispheres 4.1
1977 Female, age 85, both hemispheres 4.1
2438 Female, age 94, left hemisphere 1.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 13.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.5
Samples: 197

Max nTPM: 56.2
Min nTPM: 5.4
Std nTPM: 6.9
Median nTPM: 12.0
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 56.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 47.2
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 45.5
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 45.3
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 34.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 32.9
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 31.2
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 28.5
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 28.2
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 26.2
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 25.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 27.1
FF:10153-102I9 76 years, female 33.3
FF:10169-103B7 60 years, female 20.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 19.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 19.7
Samples: 4

Max nTPM: 23.7
Min nTPM: 14.8
Sample A Female 23.7
Sample B Female 21.5
Sample C Male 18.8
Sample D Male 14.8
Entorhinal cortex
nTPM: 16.2
Samples: 4

Max nTPM: 17.8
Min nTPM: 13.1
Sample A Female 17.8
Sample B Female 17.1
Sample C Male 16.7
Sample D Male 13.1
Subiculum
nTPM: 17.8
Samples: 4

Max nTPM: 23.1
Min nTPM: 15.5
Sample A Female 23.1
Sample B Female 15.5
Sample C Male 16.7
Sample D Male 15.8
Ventral hippocampus
nTPM: 20.0
Samples: 4

Max nTPM: 26.9
Min nTPM: 14.6
Sample A Female 21.9
Sample B Female 14.6
Sample C Male 26.9
Sample D Male 16.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 12.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 12.4
Samples: 4

Max nTPM: 15.0
Min nTPM: 10.7
Sample A Male 11.8
Sample B Male 11.9
Sample C Female 10.7
Sample D Female 15.0
Hippocampal formation
nTPM: 10.0
Samples: 4

Max nTPM: 11.2
Min nTPM: 8.8
Sample A Male 8.8
Sample B Male 11.2
Sample C Female 10.7
Sample D Female 9.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.0
654929 Antisense, RP_040922_01_B03, Mouse strain C57BL/6J (56 days, male) 3.5
71789051 Antisense, RP_051010_03_C11, Mouse strain C57BL/6J (56 days, male) 2.5

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