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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:23065.0 nTPM
HPA:23065.0 nTPM
Pig:8232.3 nTPM
Allen mouse:19.1 Expression energy

PONS - Annotated protein expression
Pending normal tissue analysis

PONS - HPA Brain RNA-seq
Max nTPM 23065.0
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 17413.0
2301 Female, age 85, both hemispheres 25391.5
2188 Female, age 91, both hemispheres 16425.7
1984 Male, age 76, both hemispheres 14656.9
2090 Male, age 80, both hemispheres 13177.9
Dorsal cochlear nucleus
nTPM: 18616.7
2378 Male, age 80, both hemispheres 25650.8
2802 Male, age 74, right hemisphere 19741.4
2187 Female, age 91, both hemispheres 16119.8
2058 Male, age 76, both hemispheres 16027.5
2370 Male, age 61, both hemispheres 15543.9
Dorsal tegmental nucleus
nTPM: 17505.9
2358 Male, age 61, both hemispheres 24618.0
1936 Male, age 76, left hemisphere 15721.2
2083 Male, age 80, both hemispheres 15555.7
2326 Male, age 74, both hemispheres 14128.4
Dorsolateral tegmental area
nTPM: 13997.1
2141 Male, age 76, both hemispheres 18283.4
2337 Male, age 61, both hemispheres 15100.3
2654 Male, age 80, both hemispheres 14207.2
2751 Female, age 85, both hemispheres 11562.9
2360 Male, age 74, both hemispheres 10831.7
Kolliker-Fuse nucleus
nTPM: 17678.8
2793 Female, age 91, left hemisphere 25488.9
2163 Male, age 80, both hemispheres 16521.6
2315 Male, age 76, right hemisphere 11026.0
Lateral lemniscal nuclei
nTPM: 16463.9
2320 Female, age 91, left hemisphere 22029.7
2169 Male, age 76, both hemispheres 18762.5
2453 Male, age 74, right hemisphere 18166.1
2036 Male, age 80, both hemispheres 12970.3
2746 Female, age 85, left hemisphere 10390.7
Lateral parabrachial nucleus
nTPM: 14048.5
2792 Male, age 76, both hemispheres 17105.1
2790 Male, age 61, both hemispheres 15340.7
2139 Female, age 85, right hemisphere 12660.2
2013 Male, age 80, both hemispheres 11088.2
Lateral vestibular nucleus
nTPM: 22270.4
2184 Male, age 76, both hemispheres 24422.4
2311 Male, age 80, both hemispheres 20118.4
Locus coeruleus
nTPM: 15951.9
2720 Male, age 74, both hemispheres 24338.9
2162 Male, age 80, both hemispheres 18148.0
2788 Male, age 74, unknown 16333.5
2317 Female, age 72, unknown 14396.9
1980 Male, age 76, both hemispheres 13959.6
2014 Male, age 55, unknown 12886.0
2123 Female, age 91, both hemispheres 11600.2
Medial olivary nucleus
nTPM: 13936.2
2851 Male, age 80, both hemispheres 22723.3
2138 Female, age 91, both hemispheres 11844.9
1962 Male, age 76, both hemispheres 11243.0
1943 Male, age 61, both hemispheres 9933.6
Medial parabrachial nucleus
nTPM: 15543.6
2854 Male, age 80, both hemispheres 20807.6
2786 Male, age 76, both hemispheres 18012.0
2156 Male, age 61, both hemispheres 16157.6
2170 Female, age 91, both hemispheres 13174.4
2463 Female, age 85, right hemisphere 9566.5
Medial periolivary nuclei
nTPM: 15571.2
2458 Female, age 91, both hemispheres 23350.7
2171 Female, age 85, both hemispheres 17166.1
2063 Male, age 76, both hemispheres 13162.4
2081 Male, age 80, both hemispheres 12441.2
2791 Male, age 74, right hemisphere 11735.6
Motor facial nucleus
nTPM: 21792.3
2795 Female, age 91, both hemispheres 34376.2
2697 Female, age 85, both hemispheres 28535.1
2327 Male, age 80, both hemispheres 28086.8
2365 Male, age 74, right hemisphere 13713.7
2062 Male, age 76, both hemispheres 13212.0
2126 Male, age 61, both hemispheres 12829.9
Motor trigeminal nucleus
nTPM: 17415.6
2321 Female, age 91, both hemispheres 22994.7
2309 Male, age 76, both hemispheres 17299.3
2560 Male, age 74, both hemispheres 16238.4
2335 Male, age 61, both hemispheres 16134.9
2079 Male, age 80, both hemispheres 14410.7
Nuclei of the trapezoid body
nTPM: 16054.6
2368 Female, age 91, both hemispheres 22602.8
2166 Male, age 80, both hemispheres 17752.5
1983 Male, age 76, both hemispheres 14097.5
2159 Male, age 61, both hemispheres 13577.1
2735 Female, age 85, both hemispheres 12242.8
Paramedian reticular nucleus
nTPM: 14668.8
2313 Male, age 61, both hemispheres 17517.3
2052 Male, age 76, both hemispheres 15167.7
2050 Female, age 85, both hemispheres 14714.5
2057 Male, age 80, both hemispheres 11275.7
Pontine nuclei
nTPM: 13098.5
2319 Female, age 91, both hemispheres 17308.4
2787 Female, age 85, both hemispheres 14977.6
2115 Male, age 80, left hemisphere 13644.6
2454 Male, age 74, left hemisphere 13182.8
1863 Male, age 55, unknown 12704.3
1968 Male, age 76, left hemisphere 12531.8
2109 Female, age 72, unknown 10774.5
2727 Male, age 61, right hemisphere 9664.1
Pontine raphe nucleus
nTPM: 15789.0
2853 Male, age 76, midline 17974.5
2122 Female, age 85, midline 13603.5
Posteroventral cochlear nucleus
nTPM: 14353.1
2341 Male, age 80, both hemispheres 17867.8
2371 Male, age 61, both hemispheres 16015.9
2752 Female, age 85, both hemispheres 13219.5
2135 Female, age 91, both hemispheres 12419.4
2070 Male, age 76, both hemispheres 12242.7
Principal sensory trigeminal nucleus
nTPM: 19051.3
2324 Male, age 76, both hemispheres 29165.9
2367 Female, age 91, left hemisphere 22156.7
2158 Male, age 61, both hemispheres 13070.3
2008 Male, age 80, left hemisphere 11812.3
Reticular pontine nucleus, caudal
nTPM: 19290.5
2332 Male, age 80, right hemisphere 26333.1
2457 Female, age 91, both hemispheres 23265.8
2092 Male, age 76, both hemispheres 14099.7
2559 Male, age 74, both hemispheres 13463.6
Reticular pontine nucleus, oral
nTPM: 15889.7
2366 Female, age 91, both hemispheres 25133.8
2167 Male, age 76, both hemispheres 18239.3
1939 Male, age 80, both hemispheres 12829.8
2361 Male, age 74, both hemispheres 11811.2
2012 Female, age 85, both hemispheres 11434.5
Reticulotegmental nucleus
nTPM: 23065.0
2322 Female, age 91, both hemispheres 26615.3
2333 Male, age 80, both hemispheres 25150.0
2325 Male, age 76, both hemispheres 22608.7
2452 Male, age 74, both hemispheres 17885.8
Spinal trigeminal nucleus, oral
nTPM: 17224.0
2164 Male, age 80, both hemispheres 24731.2
1978 Male, age 76, both hemispheres 14861.1
2737 Female, age 85, both hemispheres 12079.6
Subcoeruleus area
nTPM: 14479.0
2323 Female, age 91, left hemisphere 16201.5
2451 Male, age 74, both hemispheres 15296.6
2089 Male, age 76, left hemisphere 14781.4
1958 Male, age 80, both hemispheres 14679.8
2369 Female, age 85, left hemisphere 11435.5
Superior olive
nTPM: 17178.5
2561 Female, age 91, both hemispheres 26483.4
2329 Male, age 80, right hemisphere 24042.4
2020 Male, age 76, both hemispheres 12800.6
1875 Female, age 85, both hemispheres 11452.5
2364 Male, age 74, right hemisphere 11113.5
Superior vestibular nucleus
nTPM: 12664.5
2061 Male, age 76, both hemispheres 13693.7
2015 Male, age 80, both hemispheres 12276.4
2383 Male, age 74, both hemispheres 12023.3
Ventral periolivary nuclei
nTPM: 17219.4
2794 Female, age 91, left hemisphere 23305.4
2165 Male, age 80, both hemispheres 19383.6
2130 Female, age 85, both hemispheres 14911.9
2023 Male, age 76, both hemispheres 11276.9
Ventrolateral tegmental area, A5 NE cell group
nTPM: 18692.0
2840 Female, age 85, both hemispheres 22242.6
2456 Female, age 91, both hemispheres 21942.0
2359 Male, age 61, both hemispheres 19652.5
2161 Male, age 80, both hemispheres 18372.5
1959 Male, age 76, both hemispheres 15195.6
2449 Male, age 74, both hemispheres 14746.9

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 8232.3
Pig sample Sample description nTPM
Pons
nTPM: 8232.3
Samples: 4

Max nTPM: 10261.3
Min nTPM: 5566.9
Sample A Female 9619.2
Sample B Female 5566.9
Sample C Male 7481.8
Sample D Male 10261.3

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 19.1
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 19.1
75080269 Antisense, RP_060412_06_H09, Mouse strain C57BL/6J (56 days, male) 22.0
73906215 Antisense, RP_051212_04_H07, Mouse strain C57BL/6J (56 days, male) 16.1

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