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BRAIN PONS AND MEDULLA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
PONS AND MEDULLA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:25147.7 nTPM
HPA:25147.7 nTPM
Pig:8232.3 nTPM
Mouse:5453.1 nTPM
Allen mouse:19.1 Expression energy

PONS AND MEDULLA - Annotated protein expression
Pending normal tissue analysis

PONS AND MEDULLA - HPA Brain RNA-seq
Max nTPM 25147.7
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 17413.0
2301 Female, age 85, both hemispheres 25391.5
2188 Female, age 91, both hemispheres 16425.7
1984 Male, age 76, both hemispheres 14656.9
2090 Male, age 80, both hemispheres 13177.9
Area postrema
nTPM: 22023.5
2306 Male, age 80, both hemispheres 25389.5
2799 Male, age 61, both hemispheres 23951.5
2054 Male, age 76, both hemispheres 16729.5
Cuneate nuclei
nTPM: 22421.5
2381 Male, age 80, both hemispheres 27635.0
2131 Male, age 76, both hemispheres 22552.6
2376 Male, age 61, both hemispheres 17076.9
Dorsal cochlear nucleus
nTPM: 18616.7
2378 Male, age 80, both hemispheres 25650.8
2802 Male, age 74, right hemisphere 19741.4
2187 Female, age 91, both hemispheres 16119.8
2058 Male, age 76, both hemispheres 16027.5
2370 Male, age 61, both hemispheres 15543.9
Dorsal medullary reticular nucleus
nTPM: 16140.8
2373 Male, age 61, both hemispheres 18568.9
2088 Male, age 76, both hemispheres 17269.1
2040 Female, age 85, both hemispheres 12584.3
Dorsal motor vagal complex
nTPM: 21529.2
2797 Male, age 61, both hemispheres 36121.8
2807 Female, age 85, both hemispheres 29934.0
2185 Male, age 76, both hemispheres 23171.4
2643 Male, age 74, both hemispheres 20613.9
2813 Female, age 72, unknown 19102.2
2844 Male, age 55, unknown 15812.4
2133 Female, age 91, both hemispheres 14515.0
2000 Male, age 74, unknown 12963.1
Dorsal tegmental nucleus
nTPM: 17505.9
2358 Male, age 61, both hemispheres 24618.0
1936 Male, age 76, left hemisphere 15721.2
2083 Male, age 80, both hemispheres 15555.7
2326 Male, age 74, both hemispheres 14128.4
Dorsolateral tegmental area
nTPM: 13997.1
2141 Male, age 76, both hemispheres 18283.4
2337 Male, age 61, both hemispheres 15100.3
2654 Male, age 80, both hemispheres 14207.2
2751 Female, age 85, both hemispheres 11562.9
2360 Male, age 74, both hemispheres 10831.7
Gigantocellular reticular nuclei, medullary
nTPM: 17915.2
2387 Female, age 91, both hemispheres 23842.0
2310 Male, age 80, both hemispheres 23698.7
2314 Male, age 61, both hemispheres 20696.8
2462 Male, age 74, both hemispheres 14333.6
2022 Male, age 76, right hemisphere 13550.1
1876 Female, age 85, both hemispheres 11370.2
Gigantocellular reticular nuclei, pars
nTPM: 23003.1
2330 Male, age 80, both hemispheres 33268.8
2706 Male, age 80, both hemispheres 31071.8
2336 Male, age 61, both hemispheres 18809.3
2168 Male, age 76, both hemispheres 16029.9
2084 Female, age 85, both hemispheres 15835.7
Inferior olive
nTPM: 19781.3
2628 Female, age 91, both hemispheres 32190.6
2379 Male, age 80, both hemispheres 23148.6
2178 Male, age 61, both hemispheres 15744.1
2085 Female, age 85, both hemispheres 15074.4
2563 Male, age 74, both hemispheres 12748.8
Kolliker-Fuse nucleus
nTPM: 17678.8
2793 Female, age 91, left hemisphere 25488.9
2163 Male, age 80, both hemispheres 16521.6
2315 Male, age 76, right hemisphere 11026.0
Lateral lemniscal nuclei
nTPM: 16463.9
2320 Female, age 91, left hemisphere 22029.7
2169 Male, age 76, both hemispheres 18762.5
2453 Male, age 74, right hemisphere 18166.1
2036 Male, age 80, both hemispheres 12970.3
2746 Female, age 85, left hemisphere 10390.7
Lateral medullary reticular nucleus
nTPM: 16151.9
2374 Male, age 61, both hemispheres 22535.0
2804 Female, age 91, both hemispheres 20938.6
2190 Female, age 85, both hemispheres 16447.8
2044 Male, age 76, both hemispheres 14440.0
2852 Male, age 80, both hemispheres 12196.5
2305 Male, age 74, both hemispheres 10353.4
Lateral parabrachial nucleus
nTPM: 14048.5
2792 Male, age 76, both hemispheres 17105.1
2790 Male, age 61, both hemispheres 15340.7
2139 Female, age 85, right hemisphere 12660.2
2013 Male, age 80, both hemispheres 11088.2
Lateral vestibular nucleus
nTPM: 22270.4
2184 Male, age 76, both hemispheres 24422.4
2311 Male, age 80, both hemispheres 20118.4
Locus coeruleus
nTPM: 15951.9
2720 Male, age 74, both hemispheres 24338.9
2162 Male, age 80, both hemispheres 18148.0
2788 Male, age 74, unknown 16333.5
2317 Female, age 72, unknown 14396.9
1980 Male, age 76, both hemispheres 13959.6
2014 Male, age 55, unknown 12886.0
2123 Female, age 91, both hemispheres 11600.2
Medial olivary nucleus
nTPM: 13936.2
2851 Male, age 80, both hemispheres 22723.3
2138 Female, age 91, both hemispheres 11844.9
1962 Male, age 76, both hemispheres 11243.0
1943 Male, age 61, both hemispheres 9933.6
Medial parabrachial nucleus
nTPM: 15543.6
2854 Male, age 80, both hemispheres 20807.6
2786 Male, age 76, both hemispheres 18012.0
2156 Male, age 61, both hemispheres 16157.6
2170 Female, age 91, both hemispheres 13174.4
2463 Female, age 85, right hemisphere 9566.5
Medial periolivary nuclei
nTPM: 15571.2
2458 Female, age 91, both hemispheres 23350.7
2171 Female, age 85, both hemispheres 17166.1
2063 Male, age 76, both hemispheres 13162.4
2081 Male, age 80, both hemispheres 12441.2
2791 Male, age 74, right hemisphere 11735.6
Medial vestibular nucleus
nTPM: 17845.8
2624 Male, age 61, both hemispheres 26838.4
2803 Female, age 91, both hemispheres 19049.4
2134 Male, age 76, both hemispheres 18606.7
2801 Male, age 74, both hemispheres 15499.0
2093 Male, age 80, both hemispheres 14882.6
2743 Female, age 85, both hemispheres 12199.0
Motor facial nucleus
nTPM: 21792.3
2795 Female, age 91, both hemispheres 34376.2
2697 Female, age 85, both hemispheres 28535.1
2327 Male, age 80, both hemispheres 28086.8
2365 Male, age 74, right hemisphere 13713.7
2062 Male, age 76, both hemispheres 13212.0
2126 Male, age 61, both hemispheres 12829.9
Motor hypoglossal nucleus
nTPM: 18552.1
2461 Male, age 61, both hemispheres 29855.2
2132 Female, age 85, both hemispheres 19567.5
2182 Male, age 80, both hemispheres 18543.8
2125 Female, age 91, both hemispheres 13241.2
2277 Male, age 76, both hemispheres 11552.6
Motor trigeminal nucleus
nTPM: 17415.6
2321 Female, age 91, both hemispheres 22994.7
2309 Male, age 76, both hemispheres 17299.3
2560 Male, age 74, both hemispheres 16238.4
2335 Male, age 61, both hemispheres 16134.9
2079 Male, age 80, both hemispheres 14410.7
Nuclei of the trapezoid body
nTPM: 16054.6
2368 Female, age 91, both hemispheres 22602.8
2166 Male, age 80, both hemispheres 17752.5
1983 Male, age 76, both hemispheres 14097.5
2159 Male, age 61, both hemispheres 13577.1
2735 Female, age 85, both hemispheres 12242.8
Nucleus ambiguus
nTPM: 10981.8
2096 Female, age 85, both hemispheres 11114.9
2071 Male, age 76, both hemispheres 10848.7
Nucleus cuneatus
nTPM: 25147.7
2805 Female, age 91, both hemispheres 40858.4
2808 Female, age 85, both hemispheres 26906.8
2380 Male, age 80, both hemispheres 23327.6
2562 Male, age 61, both hemispheres 21841.9
2100 Male, age 76, both hemispheres 20710.6
2564 Male, age 74, both hemispheres 17240.8
Nucleus gracilis
nTPM: 23733.6
2299 Female, age 85, both hemispheres 27754.6
2382 Male, age 80, both hemispheres 27166.7
2627 Male, age 74, both hemispheres 16279.5
Nucleus raphe magnus
nTPM: 18291.1
2328 Male, age 80, both hemispheres 23702.4
2459 Female, age 91, both hemispheres 21938.8
2172 Female, age 85, both hemispheres 20608.6
2455 Male, age 74, both hemispheres 15393.4
2051 Male, age 76, both hemispheres 15132.9
2160 Male, age 61, both hemispheres 12970.4
Nucleus raphe obscurus
nTPM: 13504.1
2845 Female, age 85, midline 15088.1
2800 Male, age 61, midline 14783.9
2142 Male, age 76, midline 10640.3
Nucleus raphe pallidus
nTPM: 12071.5
2183 Male, age 80, midline 14760.3
2145 Male, age 76, midline 11720.1
1924 Male, age 61, midline 9734.0
Nucleus tractus solitarii
nTPM: 17506.9
2307 Male, age 80, both hemispheres 21948.3
2191 Female, age 85, both hemispheres 21555.1
2656 Male, age 76, both hemispheres 15275.5
2144 Female, age 91, right hemisphere 11248.7
Paramedian reticular nucleus
nTPM: 14668.8
2313 Male, age 61, both hemispheres 17517.3
2052 Male, age 76, both hemispheres 15167.7
2050 Female, age 85, both hemispheres 14714.5
2057 Male, age 80, both hemispheres 11275.7
Parvicellular reticular nuclei
nTPM: 15242.9
2558 Male, age 74, both hemispheres 16790.9
2095 Male, age 76, both hemispheres 16304.9
2119 Male, age 80, both hemispheres 12633.1
Parvicellular reticular nuclei, medullary
nTPM: 16635.8
2181 Male, age 80, left hemisphere 19443.7
2091 Female, age 85, both hemispheres 15246.0
2189 Female, age 91, both hemispheres 15217.6
Peritrigeminal nucleus
nTPM: 13528.8
2136 Male, age 76, both hemispheres 15757.7
2179 Male, age 61, both hemispheres 13319.0
2067 Female, age 85, both hemispheres 11509.7
Pontine nuclei
nTPM: 13098.5
2319 Female, age 91, both hemispheres 17308.4
2787 Female, age 85, both hemispheres 14977.6
2115 Male, age 80, left hemisphere 13644.6
2454 Male, age 74, left hemisphere 13182.8
1863 Male, age 55, unknown 12704.3
1968 Male, age 76, left hemisphere 12531.8
2109 Female, age 72, unknown 10774.5
2727 Male, age 61, right hemisphere 9664.1
Pontine raphe nucleus
nTPM: 15789.0
2853 Male, age 76, midline 17974.5
2122 Female, age 85, midline 13603.5
Posteroventral cochlear nucleus
nTPM: 14353.1
2341 Male, age 80, both hemispheres 17867.8
2371 Male, age 61, both hemispheres 16015.9
2752 Female, age 85, both hemispheres 13219.5
2135 Female, age 91, both hemispheres 12419.4
2070 Male, age 76, both hemispheres 12242.7
Prepositus hypoglossal nucleus
nTPM: 15858.0
2855 Female, age 85, right hemisphere 17411.6
2086 Male, age 80, both hemispheres 14304.4
Principal sensory trigeminal nucleus
nTPM: 19051.3
2324 Male, age 76, both hemispheres 29165.9
2367 Female, age 91, left hemisphere 22156.7
2158 Male, age 61, both hemispheres 13070.3
2008 Male, age 80, left hemisphere 11812.3
Reticular pontine nucleus, caudal
nTPM: 19290.5
2332 Male, age 80, right hemisphere 26333.1
2457 Female, age 91, both hemispheres 23265.8
2092 Male, age 76, both hemispheres 14099.7
2559 Male, age 74, both hemispheres 13463.6
Reticular pontine nucleus, oral
nTPM: 15889.7
2366 Female, age 91, both hemispheres 25133.8
2167 Male, age 76, both hemispheres 18239.3
1939 Male, age 80, both hemispheres 12829.8
2361 Male, age 74, both hemispheres 11811.2
2012 Female, age 85, both hemispheres 11434.5
Reticulotegmental nucleus
nTPM: 23065.0
2322 Female, age 91, both hemispheres 26615.3
2333 Male, age 80, both hemispheres 25150.0
2325 Male, age 76, both hemispheres 22608.7
2452 Male, age 74, both hemispheres 17885.8
Spinal trigeminal nucleus, caudal
nTPM: 19383.5
2390 Female, age 91, both hemispheres 24040.5
2308 Male, age 80, both hemispheres 22424.5
2447 Male, age 76, both hemispheres 18080.0
2642 Male, age 74, both hemispheres 16364.1
2312 Male, age 61, both hemispheres 16008.6
Spinal trigeminal nucleus, interpolar
nTPM: 17632.9
2625 Male, age 61, both hemispheres 24949.7
2389 Female, age 91, both hemispheres 22597.7
2066 Male, age 76, right hemisphere 14023.5
2386 Female, age 85, both hemispheres 13429.7
2033 Male, age 80, both hemispheres 13164.0
Spinal trigeminal nucleus, oral
nTPM: 17224.0
2164 Male, age 80, both hemispheres 24731.2
1978 Male, age 76, both hemispheres 14861.1
2737 Female, age 85, both hemispheres 12079.6
Spinal vestibular nucleus
nTPM: 16629.5
2796 Male, age 61, both hemispheres 22375.8
2806 Female, age 85, both hemispheres 19576.5
2186 Female, age 91, both hemispheres 15312.7
2748 Male, age 76, both hemispheres 14435.8
2384 Male, age 74, both hemispheres 14412.6
2780 Male, age 80, both hemispheres 13663.5
Subcoeruleus area
nTPM: 14479.0
2323 Female, age 91, left hemisphere 16201.5
2451 Male, age 74, both hemispheres 15296.6
2089 Male, age 76, left hemisphere 14781.4
1958 Male, age 80, both hemispheres 14679.8
2369 Female, age 85, left hemisphere 11435.5
Superior olive
nTPM: 17178.5
2561 Female, age 91, both hemispheres 26483.4
2329 Male, age 80, right hemisphere 24042.4
2020 Male, age 76, both hemispheres 12800.6
1875 Female, age 85, both hemispheres 11452.5
2364 Male, age 74, right hemisphere 11113.5
Superior vestibular nucleus
nTPM: 12664.5
2061 Male, age 76, both hemispheres 13693.7
2015 Male, age 80, both hemispheres 12276.4
2383 Male, age 74, both hemispheres 12023.3
Ventral medullary reticular nucleus
nTPM: 16708.4
2372 Male, age 61, both hemispheres 18611.6
2060 Male, age 76, both hemispheres 14805.2
Ventral periolivary nuclei
nTPM: 17219.4
2794 Female, age 91, left hemisphere 23305.4
2165 Male, age 80, both hemispheres 19383.6
2130 Female, age 85, both hemispheres 14911.9
2023 Male, age 76, both hemispheres 11276.9
Ventrolateral medulla, A1-C1 cell groups
nTPM: 15177.6
2302 Female, age 91, both hemispheres 19170.9
2180 Male, age 61, both hemispheres 16070.5
2118 Male, age 80, both hemispheres 14680.2
1986 Male, age 76, both hemispheres 13484.1
2741 Female, age 85, both hemispheres 12482.5
Ventrolateral tegmental area, A5 NE cell group
nTPM: 18692.0
2840 Female, age 85, both hemispheres 22242.6
2456 Female, age 91, both hemispheres 21942.0
2359 Male, age 61, both hemispheres 19652.5
2161 Male, age 80, both hemispheres 18372.5
1959 Male, age 76, both hemispheres 15195.6
2449 Male, age 74, both hemispheres 14746.9

PONS AND MEDULLA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 8232.3
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 6551.6
Samples: 4

Max nTPM: 7819.6
Min nTPM: 4923.9
Sample A Female 7819.6
Sample B Female 6737.6
Sample C Male 6725.3
Sample D Male 4923.9
Pons
nTPM: 8232.3
Samples: 4

Max nTPM: 10261.3
Min nTPM: 5566.9
Sample A Female 9619.2
Sample B Female 5566.9
Sample C Male 7481.8
Sample D Male 10261.3

PONS AND MEDULLA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 5453.1
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 5453.1
Samples: 4

Max nTPM: 5634.4
Min nTPM: 5345.7
Sample A Male 5345.7
Sample B Male 5427.0
Sample C Female 5405.2
Sample D Female 5634.4

PONS AND MEDULLA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 19.1
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 19.1
75080269 Antisense, RP_060412_06_H09, Mouse strain C57BL/6J (56 days, male) 20.2
73906215 Antisense, RP_051212_04_H07, Mouse strain C57BL/6J (56 days, male) 18.0
Pons
Expression energy: 19.1
75080269 Antisense, RP_060412_06_H09, Mouse strain C57BL/6J (56 days, male) 22.0
73906215 Antisense, RP_051212_04_H07, Mouse strain C57BL/6J (56 days, male) 16.1

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