BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:47.2 nTPM
HPA:47.2 nTPM
GTEx:54.0 nTPM
FANTOM5:219.2 Scaled Tags Per Million
Pig:93.8 nTPM
Mouse:164.0 nTPM
Allen mouse:3.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA039780
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 47.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 44.4
2846 Female, age 79, unknown 48.4
1857 Female, age 85, left hemisphere 47.3
2481 Female, age 94, left hemisphere 46.7
2290 Female, age 72, unknown 45.3
2288 Male, age 75, left hemisphere 45.2
1854 Male, age 80, left hemisphere 42.6
1781 Male, age 74, unknown 41.8
2289 Male, age 61, right hemisphere 38.2
Claustrum
nTPM: 40.4
1956 Male, age 74, unknown 45.6
2392 Female, age 94, both hemispheres 43.8
2196 Female, age 79, unknown 42.3
2491 Male, age 75, both hemispheres 40.3
2568 Male, age 61, both hemispheres 40.0
2198 Male, age 80, both hemispheres 39.5
2292 Female, age 85, both hemispheres 38.9
2284 Female, age 91, both hemispheres 37.6
2645 Female, age 72, unknown 35.6
Globus pallidus, externus
nTPM: 46.6
2772 Female, age 79, unknown 52.3
2395 Male, age 75, both hemispheres 52.1
1996 Male, age 80, right hemisphere 51.1
2646 Male, age 61, right hemisphere 39.9
2567 Female, age 72, unknown 37.6
Globus pallidus, internus
nTPM: 47.2
2287 Male, age 75, right hemisphere 54.3
2778 Female, age 91, both hemispheres 53.1
2483 Female, age 94, right hemisphere 47.4
2037 Male, age 80, right hemisphere 46.7
2111 Female, age 85, right hemisphere 45.3
1818 Male, age 74, unknown 45.1
2566 Female, age 72, unknown 38.5
Nucleus accumbens
nTPM: 45.8
2286 Male, age 75, left hemisphere 50.0
2391 Female, age 94, left hemisphere 48.9
1806 Female, age 85, left hemisphere 47.3
2698 Female, age 72, unknown 46.0
2824 Male, age 61, right hemisphere 44.3
1783 Male, age 74, unknown 44.0
1856 Female, age 91, right hemisphere 44.0
2732 Male, age 80, right hemisphere 41.9
Nucleus basalis of Meynert
nTPM: 41.6
2484 Female, age 94, left hemisphere 43.0
2821 Male, age 75, both hemispheres 42.8
2393 Male, age 80, right hemisphere 41.9
2569 Male, age 61, both hemispheres 38.8
Nucleus of the diagonal band
nTPM: 43.3
1812 Female, age 91, both hemispheres 47.2
2775 Male, age 80, right hemisphere 45.6
2195 Female, age 85, both hemispheres 42.0
2029 Male, age 61, right hemisphere 41.6
1979 Male, age 74, unknown 40.1
Olfactory tubercle
nTPM: 41.0
1846 Male, age 80, right hemisphere 43.8
2856 Male, age 75, right hemisphere 40.3
1998 Female, age 91, both hemispheres 40.1
2487 Female, age 94, left hemisphere 39.8
Putamen
nTPM: 43.2
2482 Female, age 94, left hemisphere 47.8
2466 Female, age 79, unknown 47.2
1937 Female, age 91, right hemisphere 43.6
1838 Male, age 80, right hemisphere 43.5
1829 Male, age 74, unknown 42.2
2489 Female, age 72, unknown 40.4
2647 Male, age 75, left hemisphere 37.8
Septal nuclei
nTPM: 42.3
2031 Female, age 72, unknown 45.3
2394 Male, age 61, left hemisphere 45.3
1960 Male, age 74, unknown 43.6
2009 Female, age 91, both hemispheres 42.2
2199 Male, age 80, right hemisphere 41.3
2629 Female, age 94, right hemisphere 39.8
2059 Female, age 85, both hemispheres 38.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 54.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 53.7
Samples: 246

Max nTPM: 105.1
Min nTPM: 31.2
Std nTPM: 10.1
Median nTPM: 51.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 105.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 95.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 89.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 88.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 83.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 77.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 76.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 76.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 75.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 72.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 71.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 49.8
Samples: 246

Max nTPM: 89.8
Min nTPM: 24.9
Std nTPM: 10.7
Median nTPM: 48.4
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 89.8
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 87.8
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 76.4
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 75.7
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 73.5
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 73.5
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 72.4
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 72.3
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 71.7
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 71.0
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 70.9
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Brain - Putamen (basal ganglia)
Average nTPM: 54.0
Samples: 205

Max nTPM: 100.6
Min nTPM: 33.1
Std nTPM: 10.1
Median nTPM: 53.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 100.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 87.8
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 81.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 75.8
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 74.0
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 73.3
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 72.9
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 71.8
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 71.6
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 71.4
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 71.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 219.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 153.7
FF:10164-103B2 76 years, female 153.7
Globus pallidus
Scaled Tags Per Million: 188.9
FF:10175-103C4 60 years, female 218.6
FF:10161-103A8 76 years, female 159.1
Nucleus accumbens
Scaled Tags Per Million: 219.2
FF:10037-101F1 23-56 years, mixed 219.2
Putamen
Scaled Tags Per Million: 169.4
FF:10176-103C5 60 years, female 169.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 93.8
Pig sample Sample description nTPM
Caudate
nTPM: 63.4
Samples: 4

Max nTPM: 71.7
Min nTPM: 56.3
Sample A Female 61.8
Sample B Female 56.3
Sample C Male 71.7
Sample D Male 63.7
Putamen
nTPM: 93.8
Samples: 4

Max nTPM: 140.0
Min nTPM: 69.4
Sample A Female 80.4
Sample B Female 69.4
Sample C Male 140.0
Sample D Male 85.5
Septum
nTPM: 69.2
Samples: 4

Max nTPM: 83.9
Min nTPM: 58.2
Sample A Female 65.0
Sample B Female 58.2
Sample C Male 83.9
Sample D Male 69.7
Ventral pallidum
nTPM: 69.0
Samples: 4

Max nTPM: 78.4
Min nTPM: 63.8
Sample A Female 63.8
Sample B Female 66.4
Sample C Male 78.4
Sample D Male 67.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 164.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 159.5
Samples: 4

Max nTPM: 164.1
Min nTPM: 153.3
Sample A Male 161.6
Sample B Male 153.3
Sample C Female 164.1
Sample D Female 159.1
Septum
nTPM: 164.0
Samples: 4

Max nTPM: 172.7
Min nTPM: 150.8
Sample A Male 150.8
Sample B Male 172.7
Sample C Female 161.0
Sample D Female 171.4
Ventral forebrain
nTPM: 158.3
Samples: 4

Max nTPM: 160.5
Min nTPM: 154.9
Sample A Male 158.6
Sample B Male 159.0
Sample C Female 160.5
Sample D Female 154.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.2
68545935 Antisense, RP_050120_01_G04, Mouse strain C57BL/6J (56 days, male) 3.2
Pallidum
Expression energy: 2.9
68545935 Antisense, RP_050120_01_G04, Mouse strain C57BL/6J (56 days, male) 2.9

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The Human Protein Atlas

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