MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:42.5 nTPM
HPA:42.5 nTPM
GTEx:47.4 nTPM
FANTOM5:135.3 Scaled Tags Per Million
Pig:47.9 nTPM
Mouse:33.6 nTPM
Allen mouse:9.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.8
1870 Female, age 42, unknown 44.8
1833 Male, age 53, unknown 43.5
1830 Male, age 51, unknown 42.5
2828 Female, age 72, unknown 41.0
2411 Female, age 72, unknown 40.3
2019 Male, age 18, unknown 39.6
2219 Male, age 76, both hemispheres 39.2
1827 Male, age 72, unknown 38.5
2666 Male, age 74, left hemisphere 35.2
2586 Male, age 75, left hemisphere 32.9
Dorsal raphe nucleus
nTPM: 37.6
2750 Male, age 76, both hemispheres 40.5
2016 Female, age 72, unknown 38.6
2298 Female, age 72, unknown 36.6
1828 Male, age 53, unknown 36.5
2047 Male, age 72, unknown 35.9
Inferior colliculus
nTPM: 39.7
1890 Male, age 53, unknown 41.4
2849 Male, age 72, unknown 41.4
1848 Female, age 42, unknown 39.6
2097 Female, age 72, unknown 36.5
Median raphe nucleus
nTPM: 39.7
2220 Male, age 76, midline 39.7
Pedunculopontine tegmental nucleus
nTPM: 41.2
2338 Male, age 61, both hemispheres 44.3
2334 Male, age 80, both hemispheres 39.9
1921 Female, age 85, both hemispheres 39.4
Periaquaductal grey, anterior
nTPM: 35.8
1795 Male, age 51, unknown 37.4
1947 Male, age 18, unknown 35.5
2502 Female, age 75, unknown 34.4
Periaquaductal grey, dorsal
nTPM: 40.2
2850 Male, age 76, both hemispheres 42.9
2464 Female, age 72, unknown 40.2
1831 Male, age 72, unknown 40.0
1840 Male, age 53, unknown 37.8
Periaquaductal grey, lateral
nTPM: 41.8
2140 Male, age 76, both hemispheres 45.4
2272 Male, age 74, both hemispheres 40.5
2053 Male, age 18, unknown 39.4
Pretectal area
nTPM: 39.6
2667 Female, age 75, unknown 42.9
2316 Male, age 76, right hemisphere 42.6
2273 Male, age 74, both hemispheres 40.8
2407 Male, age 75, both hemispheres 40.2
2224 Female, age 72, unknown 40.0
1815 Male, age 53, unknown 39.7
2825 Male, age 18, unknown 39.5
1944 Female, age 72, unknown 37.7
1816 Male, age 51, unknown 37.5
2007 Male, age 72, unknown 37.2
1817 Female, age 42, unknown 36.9
Red nucleus
nTPM: 42.5
2503 Female, age 72, unknown 47.2
1865 Male, age 51, unknown 44.6
2823 Male, age 76, right hemisphere 44.6
2227 Male, age 72, unknown 43.8
1954 Female, age 42, unknown 43.4
1904 Male, age 53, unknown 43.3
2785 Male, age 18, unknown 41.9
2588 Male, age 74, left hemisphere 41.7
2769 Male, age 72, unknown 41.2
1821 Female, age 72, unknown 39.8
2584 Male, age 75, left hemisphere 39.3
2725 Female, age 75, unknown 39.3
Substantia nigra
nTPM: 38.2
2699 Male, age 18, unknown 42.4
2665 Male, age 74, both hemispheres 41.7
2590 Female, age 75, unknown 41.4
1889 Female, age 72, unknown 39.1
2241 Male, age 72, unknown 37.5
2583 Male, age 75, right hemisphere 37.5
2409 Female, age 72, unknown 37.0
1941 Male, age 53, unknown 36.5
1851 Male, age 51, unknown 35.5
1916 Female, age 42, unknown 33.7
Superior colliculus
nTPM: 40.2
1913 Female, age 42, unknown 47.1
1995 Male, age 72, unknown 44.7
1895 Male, age 76, right hemisphere 43.4
2087 Female, age 72, unknown 40.8
1796 Male, age 53, unknown 39.9
1839 Male, age 51, unknown 38.9
2261 Male, age 18, unknown 38.5
2668 Female, age 75, unknown 37.9
2587 Male, age 74, left hemisphere 37.6
2664 Male, age 75, both hemispheres 32.9
Ventral tegmental area
nTPM: 39.5
2223 Female, age 72, unknown 41.7
2410 Female, age 72, unknown 41.7
2218 Male, age 76, both hemispheres 39.0
1942 Male, age 51, unknown 38.8
2021 Male, age 53, unknown 38.1
1915 Female, age 42, unknown 37.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 47.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.4
Samples: 139

Max nTPM: 87.4
Min nTPM: 23.5
Std nTPM: 12.3
Median nTPM: 45.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 87.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 85.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 84.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 84.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 75.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 73.1
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 70.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 69.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 68.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 67.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 66.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 135.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 135.3
FF:10158-103A5 76 years, female 135.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 47.9
Pig sample Sample description nTPM
Midbrain
nTPM: 46.1
Samples: 4

Max nTPM: 51.7
Min nTPM: 42.5
Sample A Female 51.7
Sample B Female 43.7
Sample C Male 42.5
Sample D Male 46.5
Periaqueductal gray
nTPM: 47.9
Samples: 3

Max nTPM: 51.4
Min nTPM: 45.6
Sample B Female 46.7
Sample C Male 45.6
Sample D Male 51.4
Substantia nigra
nTPM: 46.3
Samples: 4

Max nTPM: 60.7
Min nTPM: 37.9
Sample A Female 37.9
Sample B Female 43.3
Sample C Male 43.2
Sample D Male 60.7
Superior colliculi
nTPM: 42.2
Samples: 4

Max nTPM: 46.3
Min nTPM: 35.5
Sample A Female 35.5
Sample B Female 46.3
Sample C Male 41.4
Sample D Male 45.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.6
Samples: 4

Max nTPM: 35.6
Min nTPM: 32.5
Sample A Male 33.8
Sample B Male 35.6
Sample C Female 32.6
Sample D Female 32.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.0
69818030 Antisense, RP_050510_04_C06, Mouse strain C57BL/6J (56 days, male) 9.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.