BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:50.5 nTPM
HPA:50.5 nTPM
GTEx:43.3 nTPM
FANTOM5:82.2 Scaled Tags Per Million
Pig:53.8 nTPM
Mouse:17.0 nTPM
Allen mouse:5.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA026272Antibody HPA027164
Glial cells MediumLow
Neuronal cells HighMedium





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 50.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 47.8
2289 Male, age 61, right hemisphere 50.5
1781 Male, age 74, unknown 49.3
1854 Male, age 80, left hemisphere 48.1
1857 Female, age 85, left hemisphere 47.5
2290 Female, age 72, unknown 47.1
2846 Female, age 79, unknown 47.0
2288 Male, age 75, left hemisphere 46.7
2481 Female, age 94, left hemisphere 46.1
Claustrum
nTPM: 50.5
2645 Female, age 72, unknown 54.9
2292 Female, age 85, both hemispheres 53.9
2568 Male, age 61, both hemispheres 52.1
2491 Male, age 75, both hemispheres 49.9
2284 Female, age 91, both hemispheres 49.8
1956 Male, age 74, unknown 49.7
2196 Female, age 79, unknown 49.3
2198 Male, age 80, both hemispheres 48.7
2392 Female, age 94, both hemispheres 46.6
Globus pallidus, externus
nTPM: 50.5
2567 Female, age 72, unknown 59.9
2646 Male, age 61, right hemisphere 56.2
1996 Male, age 80, right hemisphere 46.2
2395 Male, age 75, both hemispheres 45.4
2772 Female, age 79, unknown 44.5
Globus pallidus, internus
nTPM: 49.3
2566 Female, age 72, unknown 53.7
2111 Female, age 85, right hemisphere 50.8
2778 Female, age 91, both hemispheres 50.7
2037 Male, age 80, right hemisphere 49.2
1818 Male, age 74, unknown 48.3
2287 Male, age 75, right hemisphere 46.8
2483 Female, age 94, right hemisphere 45.6
Nucleus accumbens
nTPM: 47.1
2732 Male, age 80, right hemisphere 49.3
2391 Female, age 94, left hemisphere 48.8
1783 Male, age 74, unknown 47.1
1856 Female, age 91, right hemisphere 47.1
2698 Female, age 72, unknown 47.0
2824 Male, age 61, right hemisphere 46.5
1806 Female, age 85, left hemisphere 46.2
2286 Male, age 75, left hemisphere 45.1
Nucleus basalis of Meynert
nTPM: 50.4
2569 Male, age 61, both hemispheres 56.7
2821 Male, age 75, both hemispheres 49.4
2393 Male, age 80, right hemisphere 48.2
2484 Female, age 94, left hemisphere 47.2
Nucleus of the diagonal band
nTPM: 48.9
2195 Female, age 85, both hemispheres 53.1
1979 Male, age 74, unknown 49.7
2775 Male, age 80, right hemisphere 48.7
2029 Male, age 61, right hemisphere 46.7
1812 Female, age 91, both hemispheres 46.5
Olfactory tubercle
nTPM: 50.5
2856 Male, age 75, right hemisphere 52.2
2487 Female, age 94, left hemisphere 51.6
1846 Male, age 80, right hemisphere 50.2
1998 Female, age 91, both hemispheres 48.0
Putamen
nTPM: 48.9
2647 Male, age 75, left hemisphere 55.4
2489 Female, age 72, unknown 53.4
1829 Male, age 74, unknown 48.7
2482 Female, age 94, left hemisphere 47.1
1937 Female, age 91, right hemisphere 46.4
1838 Male, age 80, right hemisphere 45.9
2466 Female, age 79, unknown 45.2
Septal nuclei
nTPM: 49.8
2199 Male, age 80, right hemisphere 52.5
2059 Female, age 85, both hemispheres 51.9
2009 Female, age 91, both hemispheres 50.5
2394 Male, age 61, left hemisphere 50.4
2629 Female, age 94, right hemisphere 50.3
1960 Male, age 74, unknown 49.1
2031 Female, age 72, unknown 44.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 43.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 43.3
Samples: 246

Max nTPM: 97.6
Min nTPM: 13.5
Std nTPM: 14.7
Median nTPM: 41.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 97.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 89.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 87.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 83.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 79.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 79.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 79.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 73.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 72.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 71.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 71.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 40.7
Samples: 246

Max nTPM: 107.3
Min nTPM: 17.3
Std nTPM: 14.7
Median nTPM: 37.3
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 107.3
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 100.8
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 98.0
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 84.7
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 84.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 82.5
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 81.8
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 80.5
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 78.6
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 76.0
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 72.0
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Brain - Putamen (basal ganglia)
Average nTPM: 41.8
Samples: 205

Max nTPM: 83.8
Min nTPM: 12.2
Std nTPM: 13.8
Median nTPM: 40.1
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 83.8
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 80.3
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 79.9
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 79.7
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 79.2
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 78.0
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 73.5
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 72.7
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 71.9
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 69.1
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 67.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 82.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 65.0
FF:10164-103B2 76 years, female 65.0
Globus pallidus
Scaled Tags Per Million: 82.2
FF:10161-103A8 76 years, female 99.0
FF:10175-103C4 60 years, female 65.5
Nucleus accumbens
Scaled Tags Per Million: 59.1
FF:10037-101F1 23-56 years, mixed 59.1
Putamen
Scaled Tags Per Million: 68.1
FF:10176-103C5 60 years, female 68.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 53.8
Pig sample Sample description nTPM
Caudate
nTPM: 42.9
Samples: 4

Max nTPM: 47.1
Min nTPM: 39.4
Sample A Female 43.1
Sample B Female 41.9
Sample C Male 47.1
Sample D Male 39.4
Putamen
nTPM: 53.9
Samples: 4

Max nTPM: 56.6
Min nTPM: 48.2
Sample A Female 56.3
Sample B Female 48.2
Sample C Male 56.6
Sample D Male 54.3
Septum
nTPM: 50.8
Samples: 4

Max nTPM: 58.1
Min nTPM: 44.1
Sample A Female 51.8
Sample B Female 49.1
Sample C Male 58.1
Sample D Male 44.1
Ventral pallidum
nTPM: 51.5
Samples: 4

Max nTPM: 62.4
Min nTPM: 44.5
Sample A Female 44.8
Sample B Female 62.4
Sample C Male 54.3
Sample D Male 44.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 17.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 17.0
Samples: 4

Max nTPM: 19.0
Min nTPM: 15.2
Sample A Male 17.8
Sample B Male 15.2
Sample C Female 19.0
Sample D Female 16.0
Septum
nTPM: 15.5
Samples: 4

Max nTPM: 17.5
Min nTPM: 12.9
Sample A Male 17.5
Sample B Male 12.9
Sample C Female 14.0
Sample D Female 17.5
Ventral forebrain
nTPM: 15.6
Samples: 4

Max nTPM: 18.3
Min nTPM: 11.1
Sample A Male 15.9
Sample B Male 17.0
Sample C Female 11.1
Sample D Female 18.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.8
68562988 Antisense, RP_050120_02_H05, Mouse strain C57BL/6J (56 days, male) 5.8
Pallidum
Expression energy: 5.4
68562988 Antisense, RP_050120_02_H05, Mouse strain C57BL/6J (56 days, male) 5.4

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The Human Protein Atlas

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