BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:90.4 nTPM
HPA:90.4 nTPM
GTEx:67.0 nTPM
FANTOM5:61.5 Scaled Tags Per Million
Pig:44.3 nTPM
Mouse:38.9 nTPM
Allen mouse:4.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 90.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 54.1
2288 Male, age 75, left hemisphere 74.1
2289 Male, age 61, right hemisphere 57.2
2481 Female, age 94, left hemisphere 54.7
2290 Female, age 72, unknown 54.3
2846 Female, age 79, unknown 49.7
1781 Male, age 74, unknown 47.8
1857 Female, age 85, left hemisphere 47.5
1854 Male, age 80, left hemisphere 47.4
Claustrum
nTPM: 58.8
2292 Female, age 85, both hemispheres 77.2
1956 Male, age 74, unknown 74.0
2196 Female, age 79, unknown 60.9
2568 Male, age 61, both hemispheres 60.1
2198 Male, age 80, both hemispheres 53.4
2491 Male, age 75, both hemispheres 53.2
2284 Female, age 91, both hemispheres 52.9
2392 Female, age 94, both hemispheres 50.5
2645 Female, age 72, unknown 47.1
Globus pallidus, externus
nTPM: 90.4
2646 Male, age 61, right hemisphere 113.5
1996 Male, age 80, right hemisphere 99.9
2567 Female, age 72, unknown 90.7
2772 Female, age 79, unknown 81.6
2395 Male, age 75, both hemispheres 66.5
Globus pallidus, internus
nTPM: 88.8
2111 Female, age 85, right hemisphere 109.6
2287 Male, age 75, right hemisphere 95.2
2778 Female, age 91, both hemispheres 95.1
2566 Female, age 72, unknown 94.9
2037 Male, age 80, right hemisphere 82.4
1818 Male, age 74, unknown 76.7
2483 Female, age 94, right hemisphere 67.4
Nucleus accumbens
nTPM: 60.2
2391 Female, age 94, left hemisphere 72.3
2286 Male, age 75, left hemisphere 68.5
2698 Female, age 72, unknown 66.9
2732 Male, age 80, right hemisphere 66.7
2824 Male, age 61, right hemisphere 55.6
1806 Female, age 85, left hemisphere 55.3
1783 Male, age 74, unknown 53.9
1856 Female, age 91, right hemisphere 42.1
Nucleus basalis of Meynert
nTPM: 66.9
2569 Male, age 61, both hemispheres 103.9
2484 Female, age 94, left hemisphere 65.6
2821 Male, age 75, both hemispheres 51.9
2393 Male, age 80, right hemisphere 46.2
Nucleus of the diagonal band
nTPM: 36.9
1979 Male, age 74, unknown 44.5
1812 Female, age 91, both hemispheres 36.0
2029 Male, age 61, right hemisphere 35.6
2195 Female, age 85, both hemispheres 35.6
2775 Male, age 80, right hemisphere 32.6
Olfactory tubercle
nTPM: 36.9
2487 Female, age 94, left hemisphere 39.7
2856 Male, age 75, right hemisphere 38.1
1998 Female, age 91, both hemispheres 37.1
1846 Male, age 80, right hemisphere 32.8
Putamen
nTPM: 53.9
2647 Male, age 75, left hemisphere 67.6
1829 Male, age 74, unknown 59.4
2482 Female, age 94, left hemisphere 58.2
2489 Female, age 72, unknown 55.9
1937 Female, age 91, right hemisphere 51.2
2466 Female, age 79, unknown 45.4
1838 Male, age 80, right hemisphere 39.7
Septal nuclei
nTPM: 43.0
2394 Male, age 61, left hemisphere 60.9
2199 Male, age 80, right hemisphere 48.3
2059 Female, age 85, both hemispheres 46.6
2629 Female, age 94, right hemisphere 38.6
2031 Female, age 72, unknown 36.2
2009 Female, age 91, both hemispheres 35.9
1960 Male, age 74, unknown 34.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 67.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 55.4
Samples: 246

Max nTPM: 126.3
Min nTPM: 11.5
Std nTPM: 20.2
Median nTPM: 52.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 126.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 123.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 116.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 109.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 107.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 106.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 103.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 100.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 96.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 95.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 92.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 55.9
Samples: 246

Max nTPM: 140.7
Min nTPM: 17.6
Std nTPM: 23.4
Median nTPM: 50.3
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 140.7
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 138.3
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 132.7
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 123.4
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 117.3
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 117.1
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 113.0
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 110.6
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 108.0
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 106.3
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 106.2
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Brain - Putamen (basal ganglia)
Average nTPM: 67.0
Samples: 205

Max nTPM: 190.2
Min nTPM: 31.0
Std nTPM: 21.3
Median nTPM: 64.1
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 190.2
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 123.7
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 122.0
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 121.6
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 121.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 118.7
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 118.3
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 116.3
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 113.3
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 110.3
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 108.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 61.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 35.3
FF:10164-103B2 76 years, female 35.3
Globus pallidus
Scaled Tags Per Million: 61.5
FF:10161-103A8 76 years, female 82.9
FF:10175-103C4 60 years, female 40.2
Nucleus accumbens
Scaled Tags Per Million: 17.4
FF:10037-101F1 23-56 years, mixed 17.4
Putamen
Scaled Tags Per Million: 26.3
FF:10176-103C5 60 years, female 26.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 44.3
Pig sample Sample description nTPM
Caudate
nTPM: 30.9
Samples: 4

Max nTPM: 34.1
Min nTPM: 26.3
Sample A Female 26.3
Sample B Female 33.8
Sample C Male 34.1
Sample D Male 29.3
Putamen
nTPM: 44.3
Samples: 4

Max nTPM: 63.0
Min nTPM: 27.5
Sample A Female 63.0
Sample B Female 27.5
Sample C Male 35.3
Sample D Male 51.4
Septum
nTPM: 32.5
Samples: 4

Max nTPM: 39.0
Min nTPM: 28.1
Sample A Female 39.0
Sample B Female 28.1
Sample C Male 31.1
Sample D Male 31.9
Ventral pallidum
nTPM: 41.9
Samples: 4

Max nTPM: 55.9
Min nTPM: 27.6
Sample A Female 27.6
Sample B Female 31.8
Sample C Male 55.9
Sample D Male 52.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 38.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 39.0
Samples: 4

Max nTPM: 43.2
Min nTPM: 32.5
Sample A Male 39.7
Sample B Male 43.2
Sample C Female 32.5
Sample D Female 40.4
Septum
nTPM: 29.6
Samples: 4

Max nTPM: 37.0
Min nTPM: 25.7
Sample A Male 25.7
Sample B Male 26.2
Sample C Female 29.5
Sample D Female 37.0
Ventral forebrain
nTPM: 26.6
Samples: 4

Max nTPM: 27.9
Min nTPM: 25.7
Sample A Male 26.7
Sample B Male 25.7
Sample C Female 27.9
Sample D Female 26.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.4
70593371 Antisense, RP_050407_04_B08, Mouse strain C57BL/6J (56 days, male) 4.7
74988736 Antisense, RP_060315_04_B04, Mouse strain C57BL/6J (56 days, male) 4.0
Pallidum
Expression energy: 3.2
70593371 Antisense, RP_050407_04_B08, Mouse strain C57BL/6J (56 days, male) 3.8
74988736 Antisense, RP_060315_04_B04, Mouse strain C57BL/6J (56 days, male) 2.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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