MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:50.0 nTPM
HPA:50.0 nTPM
GTEx:65.9 nTPM
FANTOM5:19.0 Scaled Tags Per Million
Pig:15.3 nTPM
Mouse:19.5 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.7
2586 Male, age 75, left hemisphere 66.4
2828 Female, age 72, unknown 49.7
1827 Male, age 72, unknown 47.2
2666 Male, age 74, left hemisphere 46.5
2411 Female, age 72, unknown 46.1
2019 Male, age 18, unknown 45.4
1870 Female, age 42, unknown 45.0
2219 Male, age 76, both hemispheres 44.5
1830 Male, age 51, unknown 43.3
1833 Male, age 53, unknown 43.3
Dorsal raphe nucleus
nTPM: 43.0
1828 Male, age 53, unknown 43.9
2047 Male, age 72, unknown 43.8
2750 Male, age 76, both hemispheres 43.7
2016 Female, age 72, unknown 42.2
2298 Female, age 72, unknown 41.2
Inferior colliculus
nTPM: 41.9
1890 Male, age 53, unknown 43.6
2097 Female, age 72, unknown 42.6
1848 Female, age 42, unknown 41.6
2849 Male, age 72, unknown 40.0
Median raphe nucleus
nTPM: 42.8
2220 Male, age 76, midline 42.8
Pedunculopontine tegmental nucleus
nTPM: 43.8
2334 Male, age 80, both hemispheres 45.3
2338 Male, age 61, both hemispheres 43.3
1921 Female, age 85, both hemispheres 42.7
Periaquaductal grey, anterior
nTPM: 50.0
2502 Female, age 75, unknown 51.5
1795 Male, age 51, unknown 49.7
1947 Male, age 18, unknown 48.7
Periaquaductal grey, dorsal
nTPM: 40.6
1831 Male, age 72, unknown 41.1
2464 Female, age 72, unknown 41.1
1840 Male, age 53, unknown 40.9
2850 Male, age 76, both hemispheres 39.2
Periaquaductal grey, lateral
nTPM: 40.8
2053 Male, age 18, unknown 41.9
2272 Male, age 74, both hemispheres 40.4
2140 Male, age 76, both hemispheres 40.1
Pretectal area
nTPM: 44.7
2007 Male, age 72, unknown 50.3
1816 Male, age 51, unknown 48.9
1817 Female, age 42, unknown 46.3
1944 Female, age 72, unknown 46.2
1815 Male, age 53, unknown 46.0
2407 Male, age 75, both hemispheres 44.2
2667 Female, age 75, unknown 43.3
2316 Male, age 76, right hemisphere 43.0
2273 Male, age 74, both hemispheres 42.5
2825 Male, age 18, unknown 41.7
2224 Female, age 72, unknown 39.7
Red nucleus
nTPM: 48.0
2503 Female, age 72, unknown 53.7
2785 Male, age 18, unknown 50.1
2227 Male, age 72, unknown 49.9
2769 Male, age 72, unknown 49.5
2588 Male, age 74, left hemisphere 48.5
1904 Male, age 53, unknown 48.4
2584 Male, age 75, left hemisphere 47.7
1821 Female, age 72, unknown 47.5
1954 Female, age 42, unknown 46.9
1865 Male, age 51, unknown 46.2
2725 Female, age 75, unknown 45.5
2823 Male, age 76, right hemisphere 41.7
Substantia nigra
nTPM: 49.2
1916 Female, age 42, unknown 59.4
1851 Male, age 51, unknown 54.6
2699 Male, age 18, unknown 50.1
2665 Male, age 74, both hemispheres 49.9
2583 Male, age 75, right hemisphere 49.6
1889 Female, age 72, unknown 48.6
1941 Male, age 53, unknown 47.0
2409 Female, age 72, unknown 45.7
2590 Female, age 75, unknown 45.5
2241 Male, age 72, unknown 41.7
Superior colliculus
nTPM: 45.5
2668 Female, age 75, unknown 51.2
2664 Male, age 75, both hemispheres 50.9
1796 Male, age 53, unknown 49.3
2261 Male, age 18, unknown 46.7
1913 Female, age 42, unknown 44.9
1995 Male, age 72, unknown 44.4
2087 Female, age 72, unknown 43.4
2587 Male, age 74, left hemisphere 43.0
1839 Male, age 51, unknown 41.6
1895 Male, age 76, right hemisphere 39.9
Ventral tegmental area
nTPM: 47.8
1915 Female, age 42, unknown 50.6
2410 Female, age 72, unknown 49.6
1942 Male, age 51, unknown 48.6
2218 Male, age 76, both hemispheres 47.1
2223 Female, age 72, unknown 46.6
2021 Male, age 53, unknown 44.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 65.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.9
Samples: 139

Max nTPM: 128.2
Min nTPM: 29.4
Std nTPM: 15.6
Median nTPM: 62.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 128.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 113.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 113.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 103.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 99.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 95.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 94.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 93.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 92.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 91.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 90.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.0
FF:10158-103A5 76 years, female 19.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.3
Pig sample Sample description nTPM
Midbrain
nTPM: 13.5
Samples: 4

Max nTPM: 17.6
Min nTPM: 10.0
Sample A Female 14.6
Sample B Female 10.0
Sample C Male 17.6
Sample D Male 11.8
Periaqueductal gray
nTPM: 8.6
Samples: 3

Max nTPM: 9.6
Min nTPM: 6.9
Sample B Female 9.6
Sample C Male 9.3
Sample D Male 6.9
Substantia nigra
nTPM: 13.3
Samples: 4

Max nTPM: 18.7
Min nTPM: 9.5
Sample A Female 18.7
Sample B Female 11.9
Sample C Male 13.1
Sample D Male 9.5
Superior colliculi
nTPM: 15.3
Samples: 4

Max nTPM: 16.7
Min nTPM: 12.9
Sample A Female 16.0
Sample B Female 16.7
Sample C Male 15.5
Sample D Male 12.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 19.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.5
Samples: 4

Max nTPM: 20.7
Min nTPM: 18.0
Sample A Male 20.2
Sample B Male 19.1
Sample C Female 18.0
Sample D Female 20.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68546094 Antisense, RP_050120_02_A01, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.