MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:18.1 nTPM
HPA:18.1 nTPM
GTEx:16.9 nTPM
FANTOM5:59.1 Scaled Tags Per Million
Pig:33.8 nTPM
Mouse:57.1 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.7
1870 Female, age 42, unknown 17.0
1827 Male, age 72, unknown 16.5
2411 Female, age 72, unknown 16.1
2019 Male, age 18, unknown 15.7
1833 Male, age 53, unknown 14.7
2219 Male, age 76, both hemispheres 13.7
2828 Female, age 72, unknown 13.5
1830 Male, age 51, unknown 13.4
2666 Male, age 74, left hemisphere 13.2
2586 Male, age 75, left hemisphere 13.0
Dorsal raphe nucleus
nTPM: 15.6
2298 Female, age 72, unknown 18.7
2750 Male, age 76, both hemispheres 16.0
2047 Male, age 72, unknown 15.2
1828 Male, age 53, unknown 14.4
2016 Female, age 72, unknown 13.6
Inferior colliculus
nTPM: 15.4
2097 Female, age 72, unknown 17.5
1848 Female, age 42, unknown 15.5
1890 Male, age 53, unknown 14.6
2849 Male, age 72, unknown 14.2
Median raphe nucleus
nTPM: 15.5
2220 Male, age 76, midline 15.5
Pedunculopontine tegmental nucleus
nTPM: 16.0
1921 Female, age 85, both hemispheres 16.6
2334 Male, age 80, both hemispheres 16.5
2338 Male, age 61, both hemispheres 15.1
Periaquaductal grey, anterior
nTPM: 15.1
1947 Male, age 18, unknown 15.5
1795 Male, age 51, unknown 15.1
2502 Female, age 75, unknown 14.7
Periaquaductal grey, dorsal
nTPM: 15.0
1840 Male, age 53, unknown 15.7
1831 Male, age 72, unknown 15.4
2850 Male, age 76, both hemispheres 15.1
2464 Female, age 72, unknown 13.7
Periaquaductal grey, lateral
nTPM: 16.5
2272 Male, age 74, both hemispheres 19.0
2053 Male, age 18, unknown 16.7
2140 Male, age 76, both hemispheres 13.7
Pretectal area
nTPM: 18.1
1816 Male, age 51, unknown 23.2
2007 Male, age 72, unknown 21.7
1944 Female, age 72, unknown 20.8
1815 Male, age 53, unknown 20.6
1817 Female, age 42, unknown 20.4
2273 Male, age 74, both hemispheres 18.2
2224 Female, age 72, unknown 17.0
2667 Female, age 75, unknown 15.8
2825 Male, age 18, unknown 15.3
2407 Male, age 75, both hemispheres 13.7
2316 Male, age 76, right hemisphere 12.7
Red nucleus
nTPM: 14.4
1821 Female, age 72, unknown 17.5
2725 Female, age 75, unknown 17.4
1865 Male, age 51, unknown 15.3
1954 Female, age 42, unknown 15.0
2785 Male, age 18, unknown 14.7
2503 Female, age 72, unknown 14.5
1904 Male, age 53, unknown 14.3
2823 Male, age 76, right hemisphere 13.8
2769 Male, age 72, unknown 13.4
2227 Male, age 72, unknown 13.3
2588 Male, age 74, left hemisphere 12.3
2584 Male, age 75, left hemisphere 11.7
Substantia nigra
nTPM: 14.5
1889 Female, age 72, unknown 19.9
2409 Female, age 72, unknown 17.1
1941 Male, age 53, unknown 14.7
2590 Female, age 75, unknown 14.0
2241 Male, age 72, unknown 13.8
2583 Male, age 75, right hemisphere 13.7
1916 Female, age 42, unknown 13.4
1851 Male, age 51, unknown 13.3
2665 Male, age 74, both hemispheres 13.2
2699 Male, age 18, unknown 11.9
Superior colliculus
nTPM: 16.1
2261 Male, age 18, unknown 19.2
2587 Male, age 74, left hemisphere 17.7
1913 Female, age 42, unknown 17.6
2087 Female, age 72, unknown 17.5
1895 Male, age 76, right hemisphere 16.4
1796 Male, age 53, unknown 15.6
2668 Female, age 75, unknown 15.5
1995 Male, age 72, unknown 15.1
1839 Male, age 51, unknown 14.8
2664 Male, age 75, both hemispheres 12.2
Ventral tegmental area
nTPM: 14.4
2410 Female, age 72, unknown 16.1
2218 Male, age 76, both hemispheres 15.4
2223 Female, age 72, unknown 15.0
2021 Male, age 53, unknown 13.4
1915 Female, age 42, unknown 13.3
1942 Male, age 51, unknown 13.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.9
Samples: 139

Max nTPM: 28.4
Min nTPM: 9.0
Std nTPM: 3.4
Median nTPM: 16.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 28.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 28.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 25.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 25.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 24.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 24.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 23.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 23.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 23.3
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 23.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 22.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 59.1
FF:10158-103A5 76 years, female 59.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.8
Pig sample Sample description nTPM
Midbrain
nTPM: 33.8
Samples: 4

Max nTPM: 40.1
Min nTPM: 29.3
Sample A Female 34.8
Sample B Female 29.3
Sample C Male 40.1
Sample D Male 31.1
Periaqueductal gray
nTPM: 26.7
Samples: 3

Max nTPM: 28.4
Min nTPM: 24.7
Sample B Female 27.0
Sample C Male 28.4
Sample D Male 24.7
Substantia nigra
nTPM: 28.6
Samples: 4

Max nTPM: 36.3
Min nTPM: 23.1
Sample A Female 36.3
Sample B Female 26.4
Sample C Male 28.6
Sample D Male 23.1
Superior colliculi
nTPM: 32.8
Samples: 4

Max nTPM: 42.2
Min nTPM: 23.7
Sample A Female 34.0
Sample B Female 23.7
Sample C Male 42.2
Sample D Male 31.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 57.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 57.2
Samples: 4

Max nTPM: 64.5
Min nTPM: 48.7
Sample A Male 64.5
Sample B Male 57.1
Sample C Female 48.7
Sample D Female 58.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
68637814 Antisense, RP_050126_01_F08, Mouse strain C57BL/6J (56 days, male) 3.6
81599682 Antisense, RP_080104_01_B01, Mouse strain C57BL/6J (56 days, male) 1.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.