We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
IDS
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • IDS
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:194.3 nTPM
HPA:194.3 nTPM
GTEx:326.7 nTPM
FANTOM5:1016.0 Scaled Tags Per Million
Pig:84.3 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 194.3
Sample id Sample description nTPM
Amygdala
nTPM: 41.0
2517 Female, age 94, left hemisphere 92.4
2514 Male, age 75, right hemisphere 62.0
1987 Female, age 91, left hemisphere 50.4
2695 Female, age 67, right hemisphere 0.0
2814 Male, age 76, right hemisphere 0.0
Basal amygdala
nTPM: 194.3
2243 Female, age 91, right hemisphere 312.7
2827 Female, age 67, right hemisphere 255.6
2685 Female, age 94, left hemisphere 202.1
2110 Male, age 80, left hemisphere 200.9
2609 Male, age 75, right hemisphere 152.7
1955 Male, age 76, both hemispheres 41.7
Central amygdala
nTPM: 108.1
2826 Female, age 94, left hemisphere 233.9
2239 Male, age 80, left hemisphere 213.9
2515 Male, age 75, right hemisphere 71.1
2701 Female, age 91, right hemisphere 21.7
1905 Male, age 76, both hemispheres 0.0
Corticomedial amygdala
nTPM: 190.0
2829 Male, age 80, left hemisphere 286.7
2535 Female, age 67, right hemisphere 266.4
2242 Female, age 91, right hemisphere 221.1
2429 Female, age 94, left hemisphere 157.9
2428 Male, age 75, right hemisphere 143.5
2240 Male, age 76, both hemispheres 64.3
Lateral amygdala
nTPM: 130.5
2534 Female, age 94, left hemisphere 268.1
2256 Male, age 80, left hemisphere 190.6
2830 Female, age 67, right hemisphere 147.6
2255 Female, age 91, right hemisphere 118.5
2516 Male, age 75, right hemisphere 51.8
1883 Male, age 76, both hemispheres 6.6
Stria terminalis, bed nucleus
nTPM: 141.5
2486 Female, age 94, both hemispheres 204.9
1974 Female, age 91, both hemispheres 193.2
2201 Male, age 74, unknown 26.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 326.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 326.7
Samples: 152

Max nTPM: 1031.3
Min nTPM: 20.8
Std nTPM: 173.4
Median nTPM: 282.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1031.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 943.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 769.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 736.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 664.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 652.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 627.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 626.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 623.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 621.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 616.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 572.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 562.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 557.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 557.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 555.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 548.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 546.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 545.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 529.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 526.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 525.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 524.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 520.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 513.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 511.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 508.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 505.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 505.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 499.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 499.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 494.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 471.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 469.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 469.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 456.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 456.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 441.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 428.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 419.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 413.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 409.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 408.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 407.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 406.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 403.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 394.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 383.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 372.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 365.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 365.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 363.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 356.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 353.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 353.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 349.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 342.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 342.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 341.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 335.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 329.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 327.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 327.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 314.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 311.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 309.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 308.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 304.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 302.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 302.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 298.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 294.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 294.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 289.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 289.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 283.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 282.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 280.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 277.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 276.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 275.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 271.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 267.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 267.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 265.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 265.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 260.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 255.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 254.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 253.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 249.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 248.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 242.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 241.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 241.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 241.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 234.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 233.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 233.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 231.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 225.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 222.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 219.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 217.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 217.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 213.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 213.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 212.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 210.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 210.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 209.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 202.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 200.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 198.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 194.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 192.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 191.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 190.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 190.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 189.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 189.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 179.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 177.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 176.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 169.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 169.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 167.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 164.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 162.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 159.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 157.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 156.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 155.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 155.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 153.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 152.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 152.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 138.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 135.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 134.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 132.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 129.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 126.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 122.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 119.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 114.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 111.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 109.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 70.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 69.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 69.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 20.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1016.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1016.0
FF:10151-102I7 76 years, female 1016.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 84.3
Pig sample Sample description nTPM
Amygdala
nTPM: 84.3
Samples: 4

Max nTPM: 109.1
Min nTPM: 62.0
Sample A Female 109.1
Sample B Female 62.0
Sample C Male 77.1
Sample D Male 88.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.