BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:15.9 nTPM
HPA:15.9 nTPM
GTEx:15.6 nTPM
FANTOM5:24.4 Scaled Tags Per Million
Pig:11.9 nTPM
Mouse:50.9 nTPM
Allen mouse:1.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 15.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 13.1
2846 Female, age 79, unknown 14.5
2290 Female, age 72, unknown 13.8
1854 Male, age 80, left hemisphere 13.7
1857 Female, age 85, left hemisphere 13.4
1781 Male, age 74, unknown 13.3
2289 Male, age 61, right hemisphere 12.1
2288 Male, age 75, left hemisphere 11.8
2481 Female, age 94, left hemisphere 11.8
Claustrum
nTPM: 13.5
2645 Female, age 72, unknown 15.3
2568 Male, age 61, both hemispheres 15.1
2196 Female, age 79, unknown 14.4
2284 Female, age 91, both hemispheres 14.2
2491 Male, age 75, both hemispheres 13.3
1956 Male, age 74, unknown 12.8
2198 Male, age 80, both hemispheres 12.7
2392 Female, age 94, both hemispheres 12.0
2292 Female, age 85, both hemispheres 11.9
Globus pallidus, externus
nTPM: 11.3
2646 Male, age 61, right hemisphere 13.4
2567 Female, age 72, unknown 11.8
1996 Male, age 80, right hemisphere 11.4
2395 Male, age 75, both hemispheres 9.9
2772 Female, age 79, unknown 9.9
Globus pallidus, internus
nTPM: 10.9
2566 Female, age 72, unknown 11.9
2037 Male, age 80, right hemisphere 11.5
2483 Female, age 94, right hemisphere 11.4
1818 Male, age 74, unknown 10.7
2287 Male, age 75, right hemisphere 10.7
2111 Female, age 85, right hemisphere 10.2
2778 Female, age 91, both hemispheres 9.9
Nucleus accumbens
nTPM: 13.2
2698 Female, age 72, unknown 15.7
2732 Male, age 80, right hemisphere 13.9
1783 Male, age 74, unknown 13.8
1856 Female, age 91, right hemisphere 13.8
1806 Female, age 85, left hemisphere 13.5
2286 Male, age 75, left hemisphere 12.4
2824 Male, age 61, right hemisphere 12.0
2391 Female, age 94, left hemisphere 10.5
Nucleus basalis of Meynert
nTPM: 13.5
2569 Male, age 61, both hemispheres 15.1
2821 Male, age 75, both hemispheres 13.4
2393 Male, age 80, right hemisphere 13.1
2484 Female, age 94, left hemisphere 12.3
Nucleus of the diagonal band
nTPM: 15.9
2195 Female, age 85, both hemispheres 18.0
2775 Male, age 80, right hemisphere 16.4
2029 Male, age 61, right hemisphere 15.9
1979 Male, age 74, unknown 15.3
1812 Female, age 91, both hemispheres 13.7
Olfactory tubercle
nTPM: 15.8
2856 Male, age 75, right hemisphere 17.1
2487 Female, age 94, left hemisphere 15.7
1998 Female, age 91, both hemispheres 15.3
1846 Male, age 80, right hemisphere 15.1
Putamen
nTPM: 13.4
2647 Male, age 75, left hemisphere 14.9
2489 Female, age 72, unknown 14.2
1829 Male, age 74, unknown 13.7
1838 Male, age 80, right hemisphere 13.7
2466 Female, age 79, unknown 13.4
2482 Female, age 94, left hemisphere 12.3
1937 Female, age 91, right hemisphere 11.9
Septal nuclei
nTPM: 15.2
2629 Female, age 94, right hemisphere 17.4
1960 Male, age 74, unknown 17.1
2059 Female, age 85, both hemispheres 16.6
2031 Female, age 72, unknown 14.5
2009 Female, age 91, both hemispheres 14.1
2199 Male, age 80, right hemisphere 13.4
2394 Male, age 61, left hemisphere 12.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 15.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 13.6
Samples: 246

Max nTPM: 23.1
Min nTPM: 7.7
Std nTPM: 2.2
Median nTPM: 13.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 23.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 21.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 19.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 18.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 18.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 18.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 18.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 18.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 18.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 18.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 18.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 15.6
Samples: 246

Max nTPM: 26.8
Min nTPM: 6.5
Std nTPM: 3.2
Median nTPM: 15.2
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 26.8
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 26.3
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 25.9
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 23.2
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 23.2
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 23.1
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 23.1
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 23.0
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 22.6
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 22.5
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 22.1
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Brain - Putamen (basal ganglia)
Average nTPM: 13.4
Samples: 205

Max nTPM: 19.4
Min nTPM: 7.0
Std nTPM: 2.2
Median nTPM: 13.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 19.4
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 19.1
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 19.1
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 19.1
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 18.7
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 18.6
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 18.2
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 17.5
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 17.4
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 17.3
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 17.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 19.4
FF:10164-103B2 76 years, female 19.4
Globus pallidus
Scaled Tags Per Million: 10.7
FF:10161-103A8 76 years, female 11.2
FF:10175-103C4 60 years, female 10.2
Nucleus accumbens
Scaled Tags Per Million: 14.8
FF:10037-101F1 23-56 years, mixed 14.8
Putamen
Scaled Tags Per Million: 24.4
FF:10176-103C5 60 years, female 24.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 11.9
Pig sample Sample description nTPM
Caudate
nTPM: 11.2
Samples: 4

Max nTPM: 12.0
Min nTPM: 10.2
Sample A Female 10.9
Sample B Female 11.8
Sample C Male 12.0
Sample D Male 10.2
Putamen
nTPM: 10.2
Samples: 4

Max nTPM: 10.5
Min nTPM: 9.8
Sample A Female 9.8
Sample B Female 10.4
Sample C Male 10.1
Sample D Male 10.5
Septum
nTPM: 11.9
Samples: 4

Max nTPM: 12.6
Min nTPM: 10.9
Sample A Female 12.4
Sample B Female 12.6
Sample C Male 10.9
Sample D Male 11.6
Ventral pallidum
nTPM: 10.9
Samples: 4

Max nTPM: 12.1
Min nTPM: 9.6
Sample A Female 11.7
Sample B Female 12.1
Sample C Male 10.3
Sample D Male 9.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 50.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 50.9
Samples: 4

Max nTPM: 56.5
Min nTPM: 44.8
Sample A Male 50.1
Sample B Male 44.8
Sample C Female 56.5
Sample D Female 52.0
Septum
nTPM: 23.6
Samples: 4

Max nTPM: 28.0
Min nTPM: 20.0
Sample A Male 28.0
Sample B Male 21.0
Sample C Female 20.0
Sample D Female 25.3
Ventral forebrain
nTPM: 34.4
Samples: 4

Max nTPM: 40.4
Min nTPM: 28.8
Sample A Male 35.9
Sample B Male 32.5
Sample C Female 28.8
Sample D Female 40.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.2
68148760 Antisense, RP_041116_02_C04, Mouse strain C57BL/6J (56 days, male) 1.2
Pallidum
Expression energy: 0.5
68148760 Antisense, RP_041116_02_C04, Mouse strain C57BL/6J (56 days, male) 0.5

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