HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:9.5 nTPM
HPA:9.5 nTPM
GTEx:9.9 nTPM
FANTOM5:79.4 Scaled Tags Per Million
Pig:35.4 nTPM
Mouse:65.8 nTPM
Allen mouse:6.5 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 9.5
Sample id Sample description nTPM
Hippocampus
nTPM: 3.9
1898 Male, age 80, left hemisphere 9.1
2621 Female, age 67, right hemisphere 6.0
2148 Female, age 91, left hemisphere 4.4
1911 Female, age 85, right hemisphere 3.2
1855 Male, age 76, left hemisphere 0.8
2529 Female, age 94, left hemisphere 0.0
Dentate gyrus
nTPM: 4.0
1927 Female, age 91, both hemispheres 11.6
2010 Male, age 76, both hemispheres 3.9
2246 Female, age 85, both hemispheres 3.9
2531 Female, age 67, both hemispheres 3.6
2530 Female, age 94, left hemisphere 0.9
2528 Male, age 74, both hemispheres 0.0
Entorhinal gyrus
nTPM: 9.0
2613 Female, age 94, left hemisphere 19.3
1938 Female, age 85, left hemisphere 14.3
2764 Male, age 80, right hemisphere 8.6
1787 Male, age 76, left hemisphere 6.4
2686 Male, age 75, right hemisphere 5.3
2117 Female, age 91, right hemisphere 0.1
Hippocampus, CA1
nTPM: 9.5
2749 Male, age 80, left hemisphere 35.2
1873 Female, age 85, both hemispheres 7.7
2527 Male, age 74, both hemispheres 4.6
2045 Male, age 76, both hemispheres 0.1
2082 Female, age 91, right hemisphere 0.0
Hippocampus, CA2
nTPM: 4.3
1963 Male, age 80, left hemisphere 11.8
1892 Male, age 76, both hemispheres 9.7
2437 Female, age 94, left hemisphere 4.7
1940 Female, age 85, left hemisphere 0.0
2113 Female, age 91, right hemisphere 0.0
2249 Male, age 74, both hemispheres 0.0
Hippocampus, CA3
nTPM: 9.1
2137 Male, age 80, left hemisphere 29.4
1867 Male, age 76, both hemispheres 8.7
2620 Female, age 94, left hemisphere 7.3
1891 Female, age 85, both hemispheres 4.7
2861 Female, age 67, both hemispheres 4.3
2436 Male, age 74, both hemispheres 0.0
Parahippocampal cortex
nTPM: 6.5
1990 Female, age 91, right hemisphere 11.1
1850 Male, age 80, both hemispheres 10.2
2532 Female, age 72, left hemisphere 7.6
2245 Female, age 91, both hemispheres 7.1
2622 Female, age 67, right hemisphere 6.7
1933 Female, age 85, both hemispheres 6.1
2250 Female, age 67, right hemisphere 6.1
2692 Male, age 74, both hemispheres 5.5
2693 Female, age 94, both hemispheres 5.0
2018 Male, age 76, both hemispheres 0.0
Perirhinal gyrus
nTPM: 8.1
1847 Female, age 91, left hemisphere 15.5
1841 Female, age 85, right hemisphere 8.8
1794 Male, age 80, right hemisphere 7.2
2521 Female, age 94, right hemisphere 7.2
2848 Male, age 76, right hemisphere 1.8
Subiculum
nTPM: 6.0
1901 Male, age 80, both hemispheres 13.8
1977 Female, age 85, both hemispheres 9.6
2438 Female, age 94, left hemisphere 8.3
2619 Male, age 74, both hemispheres 4.1
2042 Male, age 76, both hemispheres 0.2
2729 Female, age 91, right hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 9.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 9.9
Samples: 197

Max nTPM: 27.2
Min nTPM: 3.6
Std nTPM: 4.1
Median nTPM: 8.7
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 27.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 24.1
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 23.3
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 22.3
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 21.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 21.2
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 20.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 19.4
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 19.1
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 19.0
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 18.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 79.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 79.4
FF:10169-103B7 60 years, female 84.7
FF:10153-102I9 76 years, female 74.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 35.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 29.6
Samples: 4

Max nTPM: 33.2
Min nTPM: 24.2
Sample A Female 33.2
Sample B Female 29.6
Sample C Male 31.4
Sample D Male 24.2
Entorhinal cortex
nTPM: 35.4
Samples: 4

Max nTPM: 37.4
Min nTPM: 32.3
Sample A Female 37.4
Sample B Female 34.7
Sample C Male 32.3
Sample D Male 37.3
Subiculum
nTPM: 28.2
Samples: 4

Max nTPM: 39.2
Min nTPM: 22.5
Sample A Female 39.2
Sample B Female 23.4
Sample C Male 27.5
Sample D Male 22.5
Ventral hippocampus
nTPM: 26.7
Samples: 4

Max nTPM: 36.4
Min nTPM: 18.7
Sample A Female 22.4
Sample B Female 18.7
Sample C Male 29.1
Sample D Male 36.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 65.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 65.7
Samples: 4

Max nTPM: 71.2
Min nTPM: 60.9
Sample A Male 64.0
Sample B Male 66.8
Sample C Female 60.9
Sample D Female 71.2
Hippocampal formation
nTPM: 59.4
Samples: 4

Max nTPM: 68.2
Min nTPM: 51.2
Sample A Male 53.7
Sample B Male 64.4
Sample C Female 68.2
Sample D Female 51.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.5
69289123 Antisense, RP_050407_02_E01, Mouse strain C57BL/6J (56 days, male) 12.9
70795922 Antisense, RP_050712_02_C03, Mouse strain C57BL/6J (56 days, male) 0.0

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