BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:33.2 nTPM
HPA:33.2 nTPM
GTEx:44.3 nTPM
FANTOM5:21.3 Scaled Tags Per Million
Pig:24.1 nTPM
Mouse:57.9 nTPM
Allen mouse:2.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 33.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 32.8
1857 Female, age 85, left hemisphere 36.8
2290 Female, age 72, unknown 35.9
1781 Male, age 74, unknown 35.1
2846 Female, age 79, unknown 34.3
1854 Male, age 80, left hemisphere 33.8
2289 Male, age 61, right hemisphere 31.6
2288 Male, age 75, left hemisphere 27.9
2481 Female, age 94, left hemisphere 27.5
Claustrum
nTPM: 28.7
2568 Male, age 61, both hemispheres 30.3
2645 Female, age 72, unknown 30.1
2196 Female, age 79, unknown 30.0
2284 Female, age 91, both hemispheres 28.9
2491 Male, age 75, both hemispheres 28.7
2198 Male, age 80, both hemispheres 27.9
2292 Female, age 85, both hemispheres 27.8
2392 Female, age 94, both hemispheres 27.4
1956 Male, age 74, unknown 27.3
Globus pallidus, externus
nTPM: 30.2
2772 Female, age 79, unknown 31.6
2567 Female, age 72, unknown 31.4
2395 Male, age 75, both hemispheres 30.0
2646 Male, age 61, right hemisphere 29.9
1996 Male, age 80, right hemisphere 27.9
Globus pallidus, internus
nTPM: 28.6
1818 Male, age 74, unknown 30.4
2566 Female, age 72, unknown 29.7
2037 Male, age 80, right hemisphere 29.0
2483 Female, age 94, right hemisphere 28.4
2287 Male, age 75, right hemisphere 28.2
2111 Female, age 85, right hemisphere 28.0
2778 Female, age 91, both hemispheres 26.9
Nucleus accumbens
nTPM: 33.2
1783 Male, age 74, unknown 38.9
1806 Female, age 85, left hemisphere 38.6
1856 Female, age 91, right hemisphere 36.7
2698 Female, age 72, unknown 32.3
2824 Male, age 61, right hemisphere 31.7
2732 Male, age 80, right hemisphere 30.3
2286 Male, age 75, left hemisphere 29.3
2391 Female, age 94, left hemisphere 27.8
Nucleus basalis of Meynert
nTPM: 29.8
2821 Male, age 75, both hemispheres 30.7
2569 Male, age 61, both hemispheres 30.6
2484 Female, age 94, left hemisphere 29.5
2393 Male, age 80, right hemisphere 28.4
Nucleus of the diagonal band
nTPM: 31.9
2195 Female, age 85, both hemispheres 33.4
2775 Male, age 80, right hemisphere 33.0
2029 Male, age 61, right hemisphere 31.4
1979 Male, age 74, unknown 31.1
1812 Female, age 91, both hemispheres 30.7
Olfactory tubercle
nTPM: 29.6
2487 Female, age 94, left hemisphere 30.2
1998 Female, age 91, both hemispheres 30.0
1846 Male, age 80, right hemisphere 29.6
2856 Male, age 75, right hemisphere 28.4
Putamen
nTPM: 32.5
1838 Male, age 80, right hemisphere 34.6
2466 Female, age 79, unknown 34.6
1937 Female, age 91, right hemisphere 32.8
1829 Male, age 74, unknown 32.5
2489 Female, age 72, unknown 32.4
2647 Male, age 75, left hemisphere 32.3
2482 Female, age 94, left hemisphere 28.5
Septal nuclei
nTPM: 31.5
1960 Male, age 74, unknown 35.3
2059 Female, age 85, both hemispheres 32.5
2009 Female, age 91, both hemispheres 31.6
2031 Female, age 72, unknown 31.5
2394 Male, age 61, left hemisphere 30.1
2199 Male, age 80, right hemisphere 29.7
2629 Female, age 94, right hemisphere 29.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 44.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 39.3
Samples: 246

Max nTPM: 67.0
Min nTPM: 15.7
Std nTPM: 9.6
Median nTPM: 38.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 67.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 65.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 65.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 65.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 64.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 62.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 61.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 59.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 58.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 58.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 58.3
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 44.3
Samples: 246

Max nTPM: 78.8
Min nTPM: 15.4
Std nTPM: 11.0
Median nTPM: 44.2
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 78.8
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 75.5
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 71.2
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 68.8
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 67.9
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 67.5
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 66.2
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 66.2
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 65.4
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 64.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 64.8
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 35.7
Samples: 205

Max nTPM: 70.3
Min nTPM: 18.8
Std nTPM: 9.4
Median nTPM: 33.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 70.3
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 61.3
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 58.2
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 58.1
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 57.6
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 57.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 56.3
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 55.5
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 55.5
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 54.3
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 54.1
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 11.3
FF:10164-103B2 76 years, female 11.3
Globus pallidus
Scaled Tags Per Million: 5.5
FF:10175-103C4 60 years, female 7.8
FF:10161-103A8 76 years, female 3.2
Nucleus accumbens
Scaled Tags Per Million: 9.4
FF:10037-101F1 23-56 years, mixed 9.4
Putamen
Scaled Tags Per Million: 21.3
FF:10176-103C5 60 years, female 21.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 24.1
Pig sample Sample description nTPM
Caudate
nTPM: 24.1
Samples: 4

Max nTPM: 27.4
Min nTPM: 21.4
Sample A Female 21.4
Sample B Female 27.4
Sample C Male 25.7
Sample D Male 21.9
Putamen
nTPM: 21.7
Samples: 4

Max nTPM: 26.0
Min nTPM: 16.5
Sample A Female 16.5
Sample B Female 18.6
Sample C Male 26.0
Sample D Male 25.5
Septum
nTPM: 20.8
Samples: 4

Max nTPM: 24.0
Min nTPM: 17.0
Sample A Female 20.6
Sample B Female 21.7
Sample C Male 17.0
Sample D Male 24.0
Ventral pallidum
nTPM: 20.1
Samples: 4

Max nTPM: 22.4
Min nTPM: 18.9
Sample A Female 19.1
Sample B Female 22.4
Sample C Male 18.9
Sample D Male 20.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 57.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 45.2
Samples: 4

Max nTPM: 62.6
Min nTPM: 31.7
Sample A Male 45.4
Sample B Male 62.6
Sample C Female 31.7
Sample D Female 41.0
Septum
nTPM: 54.6
Samples: 4

Max nTPM: 59.7
Min nTPM: 44.3
Sample A Male 57.0
Sample B Male 57.3
Sample C Female 59.7
Sample D Female 44.3
Ventral forebrain
nTPM: 58.0
Samples: 4

Max nTPM: 68.8
Min nTPM: 50.1
Sample A Male 61.3
Sample B Male 51.6
Sample C Female 68.8
Sample D Female 50.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.1
69736376 Antisense, RP_050503_04_F08, Mouse strain C57BL/6J (56 days, male) 2.1
Pallidum
Expression energy: 1.5
69736376 Antisense, RP_050503_04_F08, Mouse strain C57BL/6J (56 days, male) 1.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.