HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:40.4 nTPM
HPA:40.4 nTPM
GTEx:38.0 nTPM
FANTOM5:5.4 Scaled Tags Per Million
Pig:31.9 nTPM
Mouse:56.9 nTPM
Allen mouse:4.4 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 40.4
Sample id Sample description nTPM
Hippocampus
nTPM: 32.7
1911 Female, age 85, right hemisphere 34.9
2621 Female, age 67, right hemisphere 34.3
2529 Female, age 94, left hemisphere 32.2
2148 Female, age 91, left hemisphere 32.0
1898 Male, age 80, left hemisphere 31.4
1855 Male, age 76, left hemisphere 31.1
Dentate gyrus
nTPM: 32.8
1927 Female, age 91, both hemispheres 35.6
2531 Female, age 67, both hemispheres 35.5
2246 Female, age 85, both hemispheres 32.3
2010 Male, age 76, both hemispheres 32.2
2528 Male, age 74, both hemispheres 31.0
2530 Female, age 94, left hemisphere 30.2
Entorhinal gyrus
nTPM: 31.4
2613 Female, age 94, left hemisphere 36.3
2764 Male, age 80, right hemisphere 31.5
1938 Female, age 85, left hemisphere 31.1
1787 Male, age 76, left hemisphere 30.8
2686 Male, age 75, right hemisphere 29.4
2117 Female, age 91, right hemisphere 29.2
Hippocampus, CA1
nTPM: 36.6
2749 Male, age 80, left hemisphere 47.7
2045 Male, age 76, both hemispheres 37.3
2527 Male, age 74, both hemispheres 33.7
2082 Female, age 91, right hemisphere 33.1
1873 Female, age 85, both hemispheres 30.9
Hippocampus, CA2
nTPM: 32.7
2249 Male, age 74, both hemispheres 37.8
1892 Male, age 76, both hemispheres 32.9
2113 Female, age 91, right hemisphere 32.5
1963 Male, age 80, left hemisphere 32.0
2437 Female, age 94, left hemisphere 31.0
1940 Female, age 85, left hemisphere 30.1
Hippocampus, CA3
nTPM: 40.4
2436 Male, age 74, both hemispheres 53.9
2137 Male, age 80, left hemisphere 48.3
1867 Male, age 76, both hemispheres 38.2
2861 Female, age 67, both hemispheres 36.5
2620 Female, age 94, left hemisphere 34.8
1891 Female, age 85, both hemispheres 31.0
Parahippocampal cortex
nTPM: 30.6
2245 Female, age 91, both hemispheres 34.6
2250 Female, age 67, right hemisphere 31.6
2018 Male, age 76, both hemispheres 31.5
1933 Female, age 85, both hemispheres 31.1
2692 Male, age 74, both hemispheres 30.9
2622 Female, age 67, right hemisphere 30.1
2693 Female, age 94, both hemispheres 29.7
1990 Female, age 91, right hemisphere 29.5
1850 Male, age 80, both hemispheres 28.4
2532 Female, age 72, left hemisphere 28.2
Perirhinal gyrus
nTPM: 30.7
1847 Female, age 91, left hemisphere 34.3
1794 Male, age 80, right hemisphere 30.7
2848 Male, age 76, right hemisphere 30.5
2521 Female, age 94, right hemisphere 30.2
1841 Female, age 85, right hemisphere 27.9
Subiculum
nTPM: 31.7
1901 Male, age 80, both hemispheres 37.9
2042 Male, age 76, both hemispheres 33.0
2619 Male, age 74, both hemispheres 31.1
2729 Female, age 91, right hemisphere 29.8
1977 Female, age 85, both hemispheres 29.4
2438 Female, age 94, left hemisphere 29.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 38.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 38.0
Samples: 197

Max nTPM: 90.5
Min nTPM: 16.4
Std nTPM: 14.1
Median nTPM: 34.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 90.5
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 88.1
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 86.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 84.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 83.8
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 76.1
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 75.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 74.6
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 69.1
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 64.6
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 61.9
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 5.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 5.4
FF:10169-103B7 60 years, female 6.2
FF:10153-102I9 76 years, female 4.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 31.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 31.9
Samples: 4

Max nTPM: 41.0
Min nTPM: 26.1
Sample A Female 41.0
Sample B Female 34.0
Sample C Male 26.1
Sample D Male 26.5
Entorhinal cortex
nTPM: 21.2
Samples: 4

Max nTPM: 24.5
Min nTPM: 19.4
Sample A Female 24.5
Sample B Female 20.5
Sample C Male 19.4
Sample D Male 20.4
Subiculum
nTPM: 23.5
Samples: 4

Max nTPM: 29.1
Min nTPM: 19.0
Sample A Female 29.1
Sample B Female 19.0
Sample C Male 23.8
Sample D Male 21.9
Ventral hippocampus
nTPM: 31.0
Samples: 4

Max nTPM: 46.7
Min nTPM: 18.6
Sample A Female 28.8
Sample B Female 18.6
Sample C Male 30.0
Sample D Male 46.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 56.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 48.4
Samples: 4

Max nTPM: 53.3
Min nTPM: 46.5
Sample A Male 46.5
Sample B Male 46.7
Sample C Female 47.2
Sample D Female 53.3
Hippocampal formation
nTPM: 56.9
Samples: 4

Max nTPM: 65.6
Min nTPM: 44.3
Sample A Male 44.3
Sample B Male 58.3
Sample C Female 65.6
Sample D Female 59.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.4
69736376 Antisense, RP_050503_04_F08, Mouse strain C57BL/6J (56 days, male) 4.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.