BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:44.1 nTPM
HPA:44.1 nTPM
GTEx:27.5 nTPM
FANTOM5:52.9 Scaled Tags Per Million
Pig:17.0 nTPM
Mouse:33.8 nTPM
Allen mouse:1.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA046651Antibody CAB046010
Glial cells LowMedium
Neuronal cells LowMedium





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 44.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 38.5
2288 Male, age 75, left hemisphere 40.5
2481 Female, age 94, left hemisphere 40.2
1781 Male, age 74, unknown 39.4
2846 Female, age 79, unknown 39.2
2290 Female, age 72, unknown 38.9
1857 Female, age 85, left hemisphere 36.9
2289 Male, age 61, right hemisphere 36.7
1854 Male, age 80, left hemisphere 36.1
Claustrum
nTPM: 42.1
1956 Male, age 74, unknown 45.6
2491 Male, age 75, both hemispheres 43.0
2645 Female, age 72, unknown 43.0
2198 Male, age 80, both hemispheres 42.8
2284 Female, age 91, both hemispheres 41.5
2196 Female, age 79, unknown 41.3
2292 Female, age 85, both hemispheres 41.1
2392 Female, age 94, both hemispheres 40.5
2568 Male, age 61, both hemispheres 39.8
Globus pallidus, externus
nTPM: 43.9
2646 Male, age 61, right hemisphere 45.7
2567 Female, age 72, unknown 44.9
2395 Male, age 75, both hemispheres 44.1
1996 Male, age 80, right hemisphere 43.1
2772 Female, age 79, unknown 41.8
Globus pallidus, internus
nTPM: 44.1
2483 Female, age 94, right hemisphere 53.0
2287 Male, age 75, right hemisphere 48.3
2778 Female, age 91, both hemispheres 42.5
1818 Male, age 74, unknown 42.3
2566 Female, age 72, unknown 41.5
2111 Female, age 85, right hemisphere 40.6
2037 Male, age 80, right hemisphere 40.4
Nucleus accumbens
nTPM: 37.6
2391 Female, age 94, left hemisphere 41.3
2286 Male, age 75, left hemisphere 41.2
2698 Female, age 72, unknown 39.5
2732 Male, age 80, right hemisphere 37.1
1783 Male, age 74, unknown 36.8
1806 Female, age 85, left hemisphere 35.9
1856 Female, age 91, right hemisphere 34.7
2824 Male, age 61, right hemisphere 33.9
Nucleus basalis of Meynert
nTPM: 42.1
2569 Male, age 61, both hemispheres 47.9
2821 Male, age 75, both hemispheres 41.0
2484 Female, age 94, left hemisphere 40.6
2393 Male, age 80, right hemisphere 38.8
Nucleus of the diagonal band
nTPM: 40.8
2775 Male, age 80, right hemisphere 44.3
1812 Female, age 91, both hemispheres 41.2
2195 Female, age 85, both hemispheres 40.9
2029 Male, age 61, right hemisphere 39.8
1979 Male, age 74, unknown 37.6
Olfactory tubercle
nTPM: 40.7
1846 Male, age 80, right hemisphere 42.6
1998 Female, age 91, both hemispheres 42.5
2487 Female, age 94, left hemisphere 39.5
2856 Male, age 75, right hemisphere 38.3
Putamen
nTPM: 39.1
2647 Male, age 75, left hemisphere 42.4
2482 Female, age 94, left hemisphere 41.7
1829 Male, age 74, unknown 39.4
2489 Female, age 72, unknown 39.2
2466 Female, age 79, unknown 37.2
1937 Female, age 91, right hemisphere 37.1
1838 Male, age 80, right hemisphere 36.6
Septal nuclei
nTPM: 40.3
2031 Female, age 72, unknown 43.5
2629 Female, age 94, right hemisphere 42.6
2009 Female, age 91, both hemispheres 41.5
1960 Male, age 74, unknown 41.3
2199 Male, age 80, right hemisphere 37.9
2394 Male, age 61, left hemisphere 37.7
2059 Female, age 85, both hemispheres 37.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 27.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 26.0
Samples: 246

Max nTPM: 51.6
Min nTPM: 13.6
Std nTPM: 4.9
Median nTPM: 24.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 51.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 48.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 41.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 39.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 38.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 37.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 36.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 35.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 35.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 34.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 34.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 24.1
Samples: 246

Max nTPM: 41.0
Min nTPM: 13.4
Std nTPM: 4.5
Median nTPM: 23.0
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 41.0
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 39.2
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 37.7
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 36.8
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 35.7
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 35.6
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 34.5
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 34.5
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 34.4
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 34.2
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 34.1
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Brain - Putamen (basal ganglia)
Average nTPM: 27.5
Samples: 205

Max nTPM: 64.2
Min nTPM: 12.9
Std nTPM: 6.3
Median nTPM: 26.1
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 64.2
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 45.1
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 44.6
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 44.0
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 43.0
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 42.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 42.2
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 41.7
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 40.9
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 40.5
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 40.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 52.9
FF:10164-103B2 76 years, female 52.9
Globus pallidus
Scaled Tags Per Million: 48.8
FF:10161-103A8 76 years, female 71.7
FF:10175-103C4 60 years, female 26.0
Nucleus accumbens
Scaled Tags Per Million: 42.3
FF:10037-101F1 23-56 years, mixed 42.3
Putamen
Scaled Tags Per Million: 44.9
FF:10176-103C5 60 years, female 44.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 17.0
Pig sample Sample description nTPM
Caudate
nTPM: 15.9
Samples: 4

Max nTPM: 18.1
Min nTPM: 14.9
Sample A Female 15.2
Sample B Female 15.5
Sample C Male 18.1
Sample D Male 14.9
Putamen
nTPM: 15.8
Samples: 4

Max nTPM: 17.0
Min nTPM: 14.4
Sample A Female 17.0
Sample B Female 14.4
Sample C Male 15.6
Sample D Male 16.3
Septum
nTPM: 17.1
Samples: 4

Max nTPM: 19.0
Min nTPM: 15.3
Sample A Female 18.1
Sample B Female 15.8
Sample C Male 19.0
Sample D Male 15.3
Ventral pallidum
nTPM: 16.7
Samples: 4

Max nTPM: 18.8
Min nTPM: 15.6
Sample A Female 15.6
Sample B Female 15.7
Sample C Male 18.8
Sample D Male 16.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 33.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 33.8
Samples: 4

Max nTPM: 35.3
Min nTPM: 32.5
Sample A Male 33.9
Sample B Male 32.5
Sample C Female 35.3
Sample D Female 33.6
Septum
nTPM: 33.2
Samples: 4

Max nTPM: 35.9
Min nTPM: 29.8
Sample A Male 35.5
Sample B Male 29.8
Sample C Female 31.6
Sample D Female 35.9
Ventral forebrain
nTPM: 32.6
Samples: 4

Max nTPM: 34.4
Min nTPM: 29.8
Sample A Male 34.4
Sample B Male 33.3
Sample C Female 29.8
Sample D Female 32.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.1
76081027 Antisense, RP_060608_03_D02, Mouse strain C57BL/6J (56 days, male) 1.1
Pallidum
Expression energy: 0.9
76081027 Antisense, RP_060608_03_D02, Mouse strain C57BL/6J (56 days, male) 0.9

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