MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:94.7 nTPM
HPA:94.7 nTPM
GTEx:65.4 nTPM
FANTOM5:128.4 Scaled Tags Per Million
Pig:304.6 nTPM
Mouse:179.9 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 94.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.9
2219 Male, age 76, both hemispheres 86.6
2828 Female, age 72, unknown 58.7
1827 Male, age 72, unknown 57.2
2586 Male, age 75, left hemisphere 56.4
1870 Female, age 42, unknown 48.4
2411 Female, age 72, unknown 43.6
1833 Male, age 53, unknown 36.0
1830 Male, age 51, unknown 32.5
2666 Male, age 74, left hemisphere 30.8
2019 Male, age 18, unknown 29.1
Dorsal raphe nucleus
nTPM: 65.7
2298 Female, age 72, unknown 82.1
2047 Male, age 72, unknown 75.4
2016 Female, age 72, unknown 70.8
2750 Male, age 76, both hemispheres 60.5
1828 Male, age 53, unknown 39.8
Inferior colliculus
nTPM: 56.6
2097 Female, age 72, unknown 64.3
1848 Female, age 42, unknown 61.6
1890 Male, age 53, unknown 51.1
2849 Male, age 72, unknown 49.4
Median raphe nucleus
nTPM: 94.7
2220 Male, age 76, midline 94.7
Pedunculopontine tegmental nucleus
nTPM: 39.4
1921 Female, age 85, both hemispheres 58.5
2334 Male, age 80, both hemispheres 41.7
2338 Male, age 61, both hemispheres 18.1
Periaquaductal grey, anterior
nTPM: 75.2
1947 Male, age 18, unknown 100.2
1795 Male, age 51, unknown 67.8
2502 Female, age 75, unknown 57.5
Periaquaductal grey, dorsal
nTPM: 63.0
1840 Male, age 53, unknown 87.4
1831 Male, age 72, unknown 58.2
2464 Female, age 72, unknown 55.1
2850 Male, age 76, both hemispheres 51.4
Periaquaductal grey, lateral
nTPM: 50.4
2053 Male, age 18, unknown 58.9
2272 Male, age 74, both hemispheres 54.5
2140 Male, age 76, both hemispheres 37.9
Pretectal area
nTPM: 69.3
2273 Male, age 74, both hemispheres 124.0
2224 Female, age 72, unknown 80.4
2407 Male, age 75, both hemispheres 80.4
2667 Female, age 75, unknown 78.5
1815 Male, age 53, unknown 74.1
1816 Male, age 51, unknown 69.7
1944 Female, age 72, unknown 67.8
2825 Male, age 18, unknown 60.3
1817 Female, age 42, unknown 53.9
2007 Male, age 72, unknown 44.5
2316 Male, age 76, right hemisphere 28.5
Red nucleus
nTPM: 31.4
2503 Female, age 72, unknown 53.8
2725 Female, age 75, unknown 53.6
1821 Female, age 72, unknown 45.8
2588 Male, age 74, left hemisphere 34.5
1904 Male, age 53, unknown 30.8
1954 Female, age 42, unknown 29.4
1865 Male, age 51, unknown 28.1
2785 Male, age 18, unknown 26.5
2769 Male, age 72, unknown 25.7
2227 Male, age 72, unknown 24.5
2584 Male, age 75, left hemisphere 16.8
2823 Male, age 76, right hemisphere 7.6
Substantia nigra
nTPM: 65.5
1916 Female, age 42, unknown 101.8
2241 Male, age 72, unknown 98.2
1851 Male, age 51, unknown 87.9
2699 Male, age 18, unknown 65.2
1941 Male, age 53, unknown 63.3
1889 Female, age 72, unknown 61.4
2409 Female, age 72, unknown 58.6
2590 Female, age 75, unknown 42.4
2583 Male, age 75, right hemisphere 38.7
2665 Male, age 74, both hemispheres 38.0
Superior colliculus
nTPM: 59.6
1796 Male, age 53, unknown 75.6
2664 Male, age 75, both hemispheres 70.1
2587 Male, age 74, left hemisphere 67.3
2087 Female, age 72, unknown 62.7
1839 Male, age 51, unknown 62.5
2261 Male, age 18, unknown 61.1
1995 Male, age 72, unknown 58.2
2668 Female, age 75, unknown 57.3
1913 Female, age 42, unknown 46.7
1895 Male, age 76, right hemisphere 34.8
Ventral tegmental area
nTPM: 63.7
1915 Female, age 42, unknown 79.2
2218 Male, age 76, both hemispheres 68.6
2021 Male, age 53, unknown 63.7
2410 Female, age 72, unknown 62.9
1942 Male, age 51, unknown 61.5
2223 Female, age 72, unknown 46.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 65.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.4
Samples: 139

Max nTPM: 235.7
Min nTPM: 10.7
Std nTPM: 29.0
Median nTPM: 61.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 235.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 141.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 136.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 131.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 129.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 117.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 115.5
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 113.5
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 111.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 111.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 109.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 128.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 128.4
FF:10158-103A5 76 years, female 128.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 304.6
Pig sample Sample description nTPM
Midbrain
nTPM: 304.6
Samples: 4

Max nTPM: 465.0
Min nTPM: 225.3
Sample A Female 465.0
Sample B Female 234.0
Sample C Male 294.2
Sample D Male 225.3
Periaqueductal gray
nTPM: 277.6
Samples: 3

Max nTPM: 306.4
Min nTPM: 258.3
Sample B Female 268.1
Sample C Male 306.4
Sample D Male 258.3
Substantia nigra
nTPM: 256.7
Samples: 4

Max nTPM: 301.6
Min nTPM: 213.0
Sample A Female 301.6
Sample B Female 213.0
Sample C Male 285.4
Sample D Male 226.8
Superior colliculi
nTPM: 199.2
Samples: 4

Max nTPM: 245.0
Min nTPM: 109.1
Sample A Female 204.4
Sample B Female 109.1
Sample C Male 245.0
Sample D Male 238.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 179.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 179.9
Samples: 4

Max nTPM: 190.9
Min nTPM: 161.6
Sample A Male 161.6
Sample B Male 181.6
Sample C Female 190.9
Sample D Female 185.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
416 Antisense, RP_Baylor_102695, Mouse strain C57BL/6J (56 days, male) 2.0
414 Antisense, RP_Baylor_102695, Mouse strain C57BL/6J (56 days, male) 1.5
74300879 Antisense, RP_051219_03_H12, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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