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BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
133.637
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:364.2 nTPM
HPA:364.2 nTPM
GTEx:316.1 nTPM
FANTOM5:655.5 Scaled Tags Per Million
Pig:363.6 nTPM
Mouse:810.3 nTPM
Allen mouse:21.2 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

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Antibody HPA023676
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

Read more
, antibody HPA023676
Hippocampal formation mean intensity 133.637
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Polymorph layer of the dentate gyrus 87.621
Molecular layer of the dentate gyrus 80.330
Granular dentate gyrus 100.325
CA1 - oriens layer 83.712
CA1 - pyramidal layer 87.370
CA1 - radiatum layer 74.579
CA2 - oriens layer 86.993
CA2 - pyramidal layer 96.409
CA2 - radiatum layer 78.357
CA3 - oriens layer 85.621
CA3 - pyramidal layer 71.701
CA3 - radiatum layer 80.726
Stratum lucidum 89.705
Lacunosum moleculare 47.407
Subiculum 63.375

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 364.2
Sample id Sample description nTPM
Hippocampus
nTPM: 243.7
2148 Female, age 91, left hemisphere 347.2
2621 Female, age 67, right hemisphere 304.3
1898 Male, age 80, left hemisphere 242.4
1855 Male, age 76, left hemisphere 225.8
1911 Female, age 85, right hemisphere 188.2
2529 Female, age 94, left hemisphere 154.4
Dentate gyrus
nTPM: 311.2
2531 Female, age 67, both hemispheres 465.8
1927 Female, age 91, both hemispheres 430.1
2528 Male, age 74, both hemispheres 266.1
2530 Female, age 94, left hemisphere 257.5
2010 Male, age 76, both hemispheres 225.4
2246 Female, age 85, both hemispheres 222.4
Entorhinal gyrus
nTPM: 153.0
2613 Female, age 94, left hemisphere 217.0
2764 Male, age 80, right hemisphere 168.2
1938 Female, age 85, left hemisphere 162.6
2686 Male, age 75, right hemisphere 134.0
1787 Male, age 76, left hemisphere 133.0
2117 Female, age 91, right hemisphere 103.4
Hippocampus, CA1
nTPM: 306.2
2749 Male, age 80, left hemisphere 426.8
2045 Male, age 76, both hemispheres 370.6
1873 Female, age 85, both hemispheres 270.0
2082 Female, age 91, right hemisphere 243.1
2527 Male, age 74, both hemispheres 220.7
Hippocampus, CA2
nTPM: 189.3
1963 Male, age 80, left hemisphere 264.0
1892 Male, age 76, both hemispheres 239.0
2113 Female, age 91, right hemisphere 179.1
2437 Female, age 94, left hemisphere 172.8
2249 Male, age 74, both hemispheres 154.5
1940 Female, age 85, left hemisphere 126.2
Hippocampus, CA3
nTPM: 364.2
2620 Female, age 94, left hemisphere 852.1
2861 Female, age 67, both hemispheres 388.4
2137 Male, age 80, left hemisphere 370.4
1867 Male, age 76, both hemispheres 236.4
1891 Female, age 85, both hemispheres 176.1
2436 Male, age 74, both hemispheres 161.6
Parahippocampal cortex
nTPM: 152.2
2245 Female, age 91, both hemispheres 219.6
2693 Female, age 94, both hemispheres 196.3
2250 Female, age 67, right hemisphere 164.3
1990 Female, age 91, right hemisphere 159.1
2018 Male, age 76, both hemispheres 146.3
1933 Female, age 85, both hemispheres 146.0
1850 Male, age 80, both hemispheres 142.8
2622 Female, age 67, right hemisphere 136.3
2532 Female, age 72, left hemisphere 121.3
2692 Male, age 74, both hemispheres 90.0
Perirhinal gyrus
nTPM: 201.0
1847 Female, age 91, left hemisphere 247.8
2521 Female, age 94, right hemisphere 234.8
1794 Male, age 80, right hemisphere 211.0
1841 Female, age 85, right hemisphere 170.4
2848 Male, age 76, right hemisphere 141.1
Subiculum
nTPM: 147.2
2729 Female, age 91, right hemisphere 219.2
1977 Female, age 85, both hemispheres 176.0
1901 Male, age 80, both hemispheres 163.9
2042 Male, age 76, both hemispheres 117.7
2619 Male, age 74, both hemispheres 106.7
2438 Female, age 94, left hemisphere 99.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 316.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 316.1
Samples: 197

Max nTPM: 991.3
Min nTPM: 24.1
Std nTPM: 218.1
Median nTPM: 275.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 991.3
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 983.0
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 932.6
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 906.0
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 881.1
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 862.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 835.7
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 831.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 816.3
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 798.3
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 729.8
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 712.0
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 709.3
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 701.2
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 695.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 693.2
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 687.9
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 671.4
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 658.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 644.1
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 641.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 585.5
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 582.0
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 576.2
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 569.2
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 566.0
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 565.8
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 552.6
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 541.5
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 530.9
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 529.4
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 513.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 513.2
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 511.9
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 509.8
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 503.5
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 494.5
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 493.1
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 491.1
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 489.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 484.0
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 480.4
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 477.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 476.6
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 471.7
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 468.7
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 461.9
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 456.6
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 448.9
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 443.8
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 435.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 434.3
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 415.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 415.3
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 403.6
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 402.0
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 396.0
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 395.6
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 392.2
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 391.1
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 389.1
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 387.4
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 384.8
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 373.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 373.0
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 370.3
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 370.0
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 359.3
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 356.5
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 352.9
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 351.7
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 351.6
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 344.6
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 339.9
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 334.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 333.6
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 326.5
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 325.6
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 316.9
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 314.0
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 313.6
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 311.8
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 308.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 307.6
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 305.1
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 303.2
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 295.8
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 294.1
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 292.6
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 292.5
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 291.9
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 291.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 291.1
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 288.1
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 284.0
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 281.1
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 280.9
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 277.5
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 275.1
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 273.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 272.2
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 268.4
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 266.5
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 264.7
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 262.1
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 259.9
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 257.1
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 252.9
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 250.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 248.6
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 248.2
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 243.1
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 230.3
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 229.3
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 223.1
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 220.7
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 218.5
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 215.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 213.4
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 207.4
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 204.3
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 201.0
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 196.4
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 196.3
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 192.7
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 192.7
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 192.6
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 191.2
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 190.0
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 189.9
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 189.3
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 189.1
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 187.1
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 186.9
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 186.6
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 182.9
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 181.3
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 178.0
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 176.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 176.1
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 175.2
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 171.9
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 171.5
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 168.5
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 165.0
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 164.1
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 161.5
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 157.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 154.0
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 153.2
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 146.5
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 140.9
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 129.7
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 129.2
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 128.1
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 127.5
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 123.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 120.2
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 118.2
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 116.0
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 109.0
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 107.4
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 106.8
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 105.7
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 104.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 103.1
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 102.7
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 101.4
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 98.5
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 96.3
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 92.3
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 91.9
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 88.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 83.5
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 83.1
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 77.8
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 75.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 75.8
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 66.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 62.2
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 58.3
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 57.8
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 54.2
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 49.5
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 47.7
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 44.5
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 44.1
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 42.1
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 41.7
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 39.5
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 38.8
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 38.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 35.8
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 32.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 30.7
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 28.6
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 24.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 655.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 655.5
FF:10169-103B7 60 years, female 974.1
FF:10153-102I9 76 years, female 336.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 363.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 363.6
Samples: 4

Max nTPM: 434.1
Min nTPM: 184.8
Sample A Female 420.9
Sample B Female 414.6
Sample C Male 184.8
Sample D Male 434.1
Entorhinal cortex
nTPM: 146.4
Samples: 4

Max nTPM: 160.0
Min nTPM: 131.8
Sample A Female 160.0
Sample B Female 155.0
Sample C Male 138.6
Sample D Male 131.8
Subiculum
nTPM: 159.8
Samples: 4

Max nTPM: 206.8
Min nTPM: 111.4
Sample A Female 206.8
Sample B Female 133.0
Sample C Male 187.8
Sample D Male 111.4
Ventral hippocampus
nTPM: 279.1
Samples: 4

Max nTPM: 420.4
Min nTPM: 178.0
Sample A Female 232.8
Sample B Female 178.0
Sample C Male 285.0
Sample D Male 420.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 810.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 419.1
Samples: 4

Max nTPM: 454.5
Min nTPM: 352.0
Sample A Male 426.0
Sample B Male 352.0
Sample C Female 454.5
Sample D Female 443.7
Hippocampal formation
nTPM: 810.3
Samples: 4

Max nTPM: 993.4
Min nTPM: 625.2
Sample A Male 625.2
Sample B Male 887.2
Sample C Female 993.4
Sample D Female 735.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 21.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 21.2
685 Antisense, RP_040315_01_21, Mouse strain C57BL/6J (56 days, male) 21.2
684 Antisense, RP_040315_01_21, Mouse strain C57BL/6J (56 days, male) 21.0

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