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FHL1
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: Not detected
Goblet cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:235.5 nTPM
HPA:107.3 nTPM
GTEx:235.5 nTPM
FANTOM5:94.4 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA001040Antibody HPA001391Antibody CAB020817
Endocrine cells -Not detected-
Enterocytes -Not detected-
Enterocytes - Microvilli -Not detected-
Glandular cells Not detected-High
Goblet cells -Not detected-




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 107.3
overview
Male, age 65
Small intestine sample 232
nTPM: 64.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 108.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 131.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 124.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 235.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 235.5
Samples: 187

Max nTPM: 1076.0
Min nTPM: 42.8
Std nTPM: 215.9
Median nTPM: 142.4
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1076.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 994.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 890.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 877.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 854.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 827.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 822.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 810.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 789.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 739.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 733.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 692.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 678.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 639.5
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 625.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 614.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 608.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 600.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 595.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 592.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 557.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 525.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 513.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 510.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 502.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 459.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 455.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 451.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 443.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 426.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 425.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 422.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 418.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 394.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 375.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 370.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 349.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 344.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 342.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 338.0
GTEX-1192X-2526-SM-59868 50-59 years, male 335.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 331.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 330.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 321.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 315.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 312.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 304.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 295.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 292.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 289.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 276.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 275.1
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 267.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 264.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 261.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 258.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 257.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 256.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 255.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 253.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 235.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 230.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 219.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 218.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 196.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 195.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 188.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 181.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 180.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 179.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 177.6
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 174.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 173.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 171.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 165.9
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 165.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 164.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 163.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 157.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 155.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 154.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 154.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 154.1
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 153.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 150.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 149.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 149.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 147.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 147.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 145.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 145.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 143.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 142.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 142.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 141.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 139.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 138.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 136.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 134.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 134.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 132.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 131.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 130.6
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 129.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 128.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 127.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 127.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 127.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 125.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 123.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 123.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 121.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 118.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 116.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 113.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 112.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 112.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 111.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 110.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 109.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 108.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 108.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 107.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 105.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 104.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 104.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 103.3
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 102.8
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 102.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 102.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 102.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 101.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 101.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 100.6
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 98.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 97.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 97.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 97.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 96.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 96.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 95.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 95.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 94.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 94.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 94.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 93.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 92.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 90.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 88.1
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 87.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 87.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 87.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 86.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 85.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 84.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 83.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 83.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 79.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 79.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 77.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 77.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 76.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 75.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 74.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 73.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 73.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 73.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 72.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 72.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 72.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 69.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 68.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 67.5
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 66.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 66.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 65.0
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 63.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 63.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 62.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 60.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 59.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 58.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 55.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 52.1
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 49.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 46.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 42.8
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 94.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 94.4
FF:10024-101D6 15,40,85 years, mixed 94.4

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