BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:27.3 nTPM
HPA:27.3 nTPM
GTEx:23.7 nTPM
FANTOM5:133.3 Scaled Tags Per Million
Pig:135.5 nTPM
Mouse:84.3 nTPM
Allen mouse:10.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA039089
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 27.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 22.4
1857 Female, age 85, left hemisphere 34.5
1854 Male, age 80, left hemisphere 29.5
2846 Female, age 79, unknown 28.5
2290 Female, age 72, unknown 24.1
2288 Male, age 75, left hemisphere 18.1
1781 Male, age 74, unknown 16.8
2289 Male, age 61, right hemisphere 14.5
2481 Female, age 94, left hemisphere 13.1
Claustrum
nTPM: 12.0
2392 Female, age 94, both hemispheres 23.6
2491 Male, age 75, both hemispheres 15.9
2198 Male, age 80, both hemispheres 15.5
2196 Female, age 79, unknown 15.0
1956 Male, age 74, unknown 13.8
2568 Male, age 61, both hemispheres 11.3
2284 Female, age 91, both hemispheres 8.7
2292 Female, age 85, both hemispheres 2.4
2645 Female, age 72, unknown 2.2
Globus pallidus, externus
nTPM: 4.8
2395 Male, age 75, both hemispheres 17.1
2772 Female, age 79, unknown 6.4
1996 Male, age 80, right hemisphere 0.6
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
Globus pallidus, internus
nTPM: 8.8
2287 Male, age 75, right hemisphere 26.7
2483 Female, age 94, right hemisphere 19.5
2778 Female, age 91, both hemispheres 11.6
1818 Male, age 74, unknown 2.6
2111 Female, age 85, right hemisphere 1.5
2037 Male, age 80, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
Nucleus accumbens
nTPM: 27.3
2824 Male, age 61, right hemisphere 44.7
1856 Female, age 91, right hemisphere 42.4
1806 Female, age 85, left hemisphere 33.3
1783 Male, age 74, unknown 31.7
2698 Female, age 72, unknown 25.0
2391 Female, age 94, left hemisphere 17.9
2286 Male, age 75, left hemisphere 17.3
2732 Male, age 80, right hemisphere 5.9
Nucleus basalis of Meynert
nTPM: 10.9
2393 Male, age 80, right hemisphere 21.5
2484 Female, age 94, left hemisphere 12.9
2821 Male, age 75, both hemispheres 9.2
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 23.8
1812 Female, age 91, both hemispheres 33.4
2775 Male, age 80, right hemisphere 26.9
2029 Male, age 61, right hemisphere 23.9
2195 Female, age 85, both hemispheres 22.9
1979 Male, age 74, unknown 11.8
Olfactory tubercle
nTPM: 17.4
1846 Male, age 80, right hemisphere 24.2
1998 Female, age 91, both hemispheres 17.8
2487 Female, age 94, left hemisphere 17.3
2856 Male, age 75, right hemisphere 10.4
Putamen
nTPM: 20.6
1838 Male, age 80, right hemisphere 43.6
1937 Female, age 91, right hemisphere 28.7
2466 Female, age 79, unknown 26.3
1829 Male, age 74, unknown 24.1
2482 Female, age 94, left hemisphere 12.1
2647 Male, age 75, left hemisphere 7.5
2489 Female, age 72, unknown 1.8
Septal nuclei
nTPM: 14.6
2031 Female, age 72, unknown 31.0
1960 Male, age 74, unknown 21.4
2009 Female, age 91, both hemispheres 18.0
2629 Female, age 94, right hemisphere 15.7
2059 Female, age 85, both hemispheres 6.2
2199 Male, age 80, right hemisphere 5.2
2394 Male, age 61, left hemisphere 4.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 23.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 18.7
Samples: 246

Max nTPM: 65.8
Min nTPM: 5.6
Std nTPM: 7.8
Median nTPM: 17.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 65.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 42.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 39.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 38.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 36.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 35.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 35.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 35.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 34.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 34.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 34.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 23.7
Samples: 246

Max nTPM: 57.2
Min nTPM: 5.7
Std nTPM: 9.7
Median nTPM: 23.4
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 57.2
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 53.3
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 52.6
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 51.8
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 46.6
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 44.0
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 43.8
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 42.8
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 42.3
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 40.5
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 39.9
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Brain - Putamen (basal ganglia)
Average nTPM: 16.8
Samples: 205

Max nTPM: 38.8
Min nTPM: 5.5
Std nTPM: 6.6
Median nTPM: 15.6
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 38.8
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 38.1
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 36.8
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 36.6
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 34.0
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 33.2
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 31.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 30.2
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 29.9
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 29.8
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 28.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 133.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 88.2
FF:10164-103B2 76 years, female 88.2
Globus pallidus
Scaled Tags Per Million: 57.3
FF:10175-103C4 60 years, female 67.0
FF:10161-103A8 76 years, female 47.5
Nucleus accumbens
Scaled Tags Per Million: 63.0
FF:10037-101F1 23-56 years, mixed 63.0
Putamen
Scaled Tags Per Million: 133.3
FF:10176-103C5 60 years, female 133.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 135.5
Pig sample Sample description nTPM
Caudate
nTPM: 123.1
Samples: 4

Max nTPM: 145.5
Min nTPM: 97.5
Sample A Female 97.5
Sample B Female 119.2
Sample C Male 145.5
Sample D Male 130.2
Putamen
nTPM: 135.5
Samples: 4

Max nTPM: 196.6
Min nTPM: 71.1
Sample A Female 71.1
Sample B Female 132.2
Sample C Male 196.6
Sample D Male 142.2
Septum
nTPM: 92.0
Samples: 4

Max nTPM: 100.0
Min nTPM: 79.6
Sample A Female 100.0
Sample B Female 99.3
Sample C Male 89.1
Sample D Male 79.6
Ventral pallidum
nTPM: 111.3
Samples: 4

Max nTPM: 120.3
Min nTPM: 102.3
Sample A Female 120.3
Sample B Female 102.3
Sample C Male 111.2
Sample D Male 111.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 84.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 84.3
Samples: 4

Max nTPM: 87.8
Min nTPM: 77.0
Sample A Male 87.8
Sample B Male 85.5
Sample C Female 77.0
Sample D Female 86.9
Septum
nTPM: 72.1
Samples: 4

Max nTPM: 74.1
Min nTPM: 69.8
Sample A Male 71.0
Sample B Male 73.6
Sample C Female 69.8
Sample D Female 74.1
Ventral forebrain
nTPM: 71.3
Samples: 4

Max nTPM: 76.4
Min nTPM: 68.4
Sample A Male 68.4
Sample B Male 76.4
Sample C Female 70.0
Sample D Female 70.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 10.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 10.8
69526516 Antisense, RP_050421_01_A04, Mouse strain C57BL/6J (56 days, male) 10.8
Pallidum
Expression energy: 7.0
69526516 Antisense, RP_050421_01_A04, Mouse strain C57BL/6J (56 days, male) 7.0

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The Human Protein Atlas

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