MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:54.3 nTPM
HPA:54.3 nTPM
GTEx:59.5 nTPM
FANTOM5:147.3 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 54.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.3
2019 Male, age 18, unknown 49.7
1833 Male, age 53, unknown 49.0
1830 Male, age 51, unknown 48.9
2666 Male, age 74, left hemisphere 48.8
2828 Female, age 72, unknown 48.6
2586 Male, age 75, left hemisphere 46.8
1870 Female, age 42, unknown 46.2
1827 Male, age 72, unknown 45.6
2411 Female, age 72, unknown 45.0
2219 Male, age 76, both hemispheres 44.1
Dorsal raphe nucleus
nTPM: 50.3
2016 Female, age 72, unknown 53.0
2750 Male, age 76, both hemispheres 51.9
2298 Female, age 72, unknown 50.7
1828 Male, age 53, unknown 49.3
2047 Male, age 72, unknown 46.8
Inferior colliculus
nTPM: 46.3
2097 Female, age 72, unknown 46.8
2849 Male, age 72, unknown 46.8
1848 Female, age 42, unknown 45.9
1890 Male, age 53, unknown 45.8
Median raphe nucleus
nTPM: 52.4
2220 Male, age 76, midline 52.4
Pedunculopontine tegmental nucleus
nTPM: 54.3
2338 Male, age 61, both hemispheres 66.1
2334 Male, age 80, both hemispheres 51.8
1921 Female, age 85, both hemispheres 45.0
Periaquaductal grey, anterior
nTPM: 44.8
1795 Male, age 51, unknown 47.5
1947 Male, age 18, unknown 43.8
2502 Female, age 75, unknown 43.2
Periaquaductal grey, dorsal
nTPM: 49.6
2850 Male, age 76, both hemispheres 53.1
1831 Male, age 72, unknown 51.9
1840 Male, age 53, unknown 47.1
2464 Female, age 72, unknown 46.4
Periaquaductal grey, lateral
nTPM: 51.9
2272 Male, age 74, both hemispheres 54.8
2140 Male, age 76, both hemispheres 52.7
2053 Male, age 18, unknown 48.2
Pretectal area
nTPM: 48.9
2316 Male, age 76, right hemisphere 58.9
2273 Male, age 74, both hemispheres 52.3
2407 Male, age 75, both hemispheres 52.3
2224 Female, age 72, unknown 49.0
1815 Male, age 53, unknown 48.0
1817 Female, age 42, unknown 47.9
2825 Male, age 18, unknown 47.0
2007 Male, age 72, unknown 46.7
1944 Female, age 72, unknown 46.5
2667 Female, age 75, unknown 45.9
1816 Male, age 51, unknown 43.9
Red nucleus
nTPM: 47.9
1865 Male, age 51, unknown 51.4
2725 Female, age 75, unknown 51.2
2503 Female, age 72, unknown 50.5
2785 Male, age 18, unknown 50.4
2769 Male, age 72, unknown 48.8
2227 Male, age 72, unknown 48.5
2823 Male, age 76, right hemisphere 48.5
1904 Male, age 53, unknown 48.3
2584 Male, age 75, left hemisphere 46.0
1821 Female, age 72, unknown 45.1
1954 Female, age 42, unknown 44.2
2588 Male, age 74, left hemisphere 41.6
Substantia nigra
nTPM: 52.5
2665 Male, age 74, both hemispheres 61.3
2590 Female, age 75, unknown 60.3
2699 Male, age 18, unknown 58.2
2583 Male, age 75, right hemisphere 55.1
2409 Female, age 72, unknown 49.8
2241 Male, age 72, unknown 49.6
1916 Female, age 42, unknown 48.4
1941 Male, age 53, unknown 48.3
1851 Male, age 51, unknown 48.2
1889 Female, age 72, unknown 46.1
Superior colliculus
nTPM: 49.0
2587 Male, age 74, left hemisphere 53.5
1995 Male, age 72, unknown 53.3
1913 Female, age 42, unknown 52.6
2664 Male, age 75, both hemispheres 50.9
2087 Female, age 72, unknown 48.8
1839 Male, age 51, unknown 48.5
1796 Male, age 53, unknown 48.0
2261 Male, age 18, unknown 45.2
2668 Female, age 75, unknown 44.9
1895 Male, age 76, right hemisphere 44.6
Ventral tegmental area
nTPM: 51.3
2021 Male, age 53, unknown 58.6
1942 Male, age 51, unknown 51.2
1915 Female, age 42, unknown 50.4
2218 Male, age 76, both hemispheres 50.3
2223 Female, age 72, unknown 50.3
2410 Female, age 72, unknown 47.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 59.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59.5
Samples: 139

Max nTPM: 211.6
Min nTPM: 12.2
Std nTPM: 39.8
Median nTPM: 46.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 211.6
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 197.1
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 182.1
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 180.5
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 169.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 165.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 154.2
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 133.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 131.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 124.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 122.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 147.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 147.3
FF:10158-103A5 76 years, female 147.3

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The Human Protein Atlas

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