BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:67.2 nTPM
HPA:67.2 nTPM
GTEx:39.1 nTPM
FANTOM5:60.0 Scaled Tags Per Million
Pig:15.9 nTPM
Mouse:59.0 nTPM
Allen mouse:0.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA008763Antibody HPA028747Antibody CAB019394
Glial cells Not detectedNot detectedNot detected
Neuronal cells MediumLowNot detected







BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 67.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 59.0
2846 Female, age 79, unknown 66.0
2481 Female, age 94, left hemisphere 61.6
1857 Female, age 85, left hemisphere 60.0
2290 Female, age 72, unknown 58.2
2288 Male, age 75, left hemisphere 57.5
1781 Male, age 74, unknown 57.1
1854 Male, age 80, left hemisphere 55.9
2289 Male, age 61, right hemisphere 55.9
Claustrum
nTPM: 59.1
2292 Female, age 85, both hemispheres 71.7
2198 Male, age 80, both hemispheres 63.9
2196 Female, age 79, unknown 62.6
1956 Male, age 74, unknown 58.6
2284 Female, age 91, both hemispheres 56.7
2645 Female, age 72, unknown 56.7
2392 Female, age 94, both hemispheres 54.7
2568 Male, age 61, both hemispheres 53.6
2491 Male, age 75, both hemispheres 53.4
Globus pallidus, externus
nTPM: 67.2
2395 Male, age 75, both hemispheres 83.2
1996 Male, age 80, right hemisphere 68.4
2772 Female, age 79, unknown 68.4
2646 Male, age 61, right hemisphere 58.7
2567 Female, age 72, unknown 57.3
Globus pallidus, internus
nTPM: 64.0
2037 Male, age 80, right hemisphere 66.2
2111 Female, age 85, right hemisphere 65.9
2778 Female, age 91, both hemispheres 64.8
1818 Male, age 74, unknown 64.5
2483 Female, age 94, right hemisphere 63.9
2566 Female, age 72, unknown 62.4
2287 Male, age 75, right hemisphere 60.6
Nucleus accumbens
nTPM: 58.0
2698 Female, age 72, unknown 60.6
2391 Female, age 94, left hemisphere 60.2
1806 Female, age 85, left hemisphere 59.5
2286 Male, age 75, left hemisphere 59.3
2732 Male, age 80, right hemisphere 59.2
1783 Male, age 74, unknown 58.5
1856 Female, age 91, right hemisphere 56.2
2824 Male, age 61, right hemisphere 50.3
Nucleus basalis of Meynert
nTPM: 59.7
2821 Male, age 75, both hemispheres 63.6
2484 Female, age 94, left hemisphere 61.6
2569 Male, age 61, both hemispheres 58.1
2393 Male, age 80, right hemisphere 55.5
Nucleus of the diagonal band
nTPM: 56.1
1812 Female, age 91, both hemispheres 59.7
2775 Male, age 80, right hemisphere 57.8
2195 Female, age 85, both hemispheres 55.7
1979 Male, age 74, unknown 54.7
2029 Male, age 61, right hemisphere 52.6
Olfactory tubercle
nTPM: 54.5
1846 Male, age 80, right hemisphere 56.6
1998 Female, age 91, both hemispheres 55.3
2487 Female, age 94, left hemisphere 54.7
2856 Male, age 75, right hemisphere 51.5
Putamen
nTPM: 59.3
2482 Female, age 94, left hemisphere 68.4
2466 Female, age 79, unknown 61.9
2489 Female, age 72, unknown 61.7
1829 Male, age 74, unknown 58.2
1937 Female, age 91, right hemisphere 57.3
2647 Male, age 75, left hemisphere 53.8
1838 Male, age 80, right hemisphere 53.6
Septal nuclei
nTPM: 57.2
2394 Male, age 61, left hemisphere 58.8
1960 Male, age 74, unknown 58.7
2031 Female, age 72, unknown 58.3
2199 Male, age 80, right hemisphere 58.1
2059 Female, age 85, both hemispheres 56.7
2009 Female, age 91, both hemispheres 56.5
2629 Female, age 94, right hemisphere 53.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 39.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 34.5
Samples: 246

Max nTPM: 93.9
Min nTPM: 9.6
Std nTPM: 10.9
Median nTPM: 31.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 93.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 76.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 75.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 64.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 62.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 59.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 59.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 58.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 57.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 57.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 56.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 34.2
Samples: 246

Max nTPM: 93.2
Min nTPM: 15.8
Std nTPM: 11.3
Median nTPM: 31.2
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 93.2
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 82.1
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 77.2
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 73.1
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 63.9
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 62.2
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 61.6
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 61.3
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 60.7
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 60.6
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 58.8
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Brain - Putamen (basal ganglia)
Average nTPM: 39.1
Samples: 205

Max nTPM: 92.8
Min nTPM: 17.2
Std nTPM: 11.6
Median nTPM: 35.8
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 92.8
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 71.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 67.6
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 67.4
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 67.1
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 66.8
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 66.2
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 65.3
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 65.2
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 64.5
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 63.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 60.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 43.7
FF:10164-103B2 76 years, female 43.7
Globus pallidus
Scaled Tags Per Million: 60.0
FF:10175-103C4 60 years, female 68.6
FF:10161-103A8 76 years, female 51.4
Nucleus accumbens
Scaled Tags Per Million: 50.7
FF:10037-101F1 23-56 years, mixed 50.7
Putamen
Scaled Tags Per Million: 30.8
FF:10176-103C5 60 years, female 30.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 15.9
Pig sample Sample description nTPM
Caudate
nTPM: 13.2
Samples: 4

Max nTPM: 17.4
Min nTPM: 11.3
Sample A Female 11.3
Sample B Female 12.0
Sample C Male 17.4
Sample D Male 11.9
Putamen
nTPM: 15.9
Samples: 4

Max nTPM: 18.7
Min nTPM: 10.9
Sample A Female 18.0
Sample B Female 10.9
Sample C Male 16.1
Sample D Male 18.7
Septum
nTPM: 15.0
Samples: 4

Max nTPM: 19.2
Min nTPM: 11.7
Sample A Female 13.6
Sample B Female 11.7
Sample C Male 19.2
Sample D Male 15.5
Ventral pallidum
nTPM: 14.8
Samples: 4

Max nTPM: 19.7
Min nTPM: 10.1
Sample A Female 10.1
Sample B Female 14.9
Sample C Male 19.7
Sample D Male 14.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 59.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 55.0
Samples: 4

Max nTPM: 64.7
Min nTPM: 51.2
Sample A Male 51.9
Sample B Male 52.1
Sample C Female 51.2
Sample D Female 64.7
Septum
nTPM: 49.9
Samples: 4

Max nTPM: 52.4
Min nTPM: 47.3
Sample A Male 49.9
Sample B Male 50.1
Sample C Female 52.4
Sample D Female 47.3
Ventral forebrain
nTPM: 59.1
Samples: 4

Max nTPM: 66.0
Min nTPM: 54.2
Sample A Male 54.2
Sample B Male 55.4
Sample C Female 66.0
Sample D Female 60.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
541 Antisense, RP_Baylor_102831, Mouse strain C57BL/6J (56 days, male) 0.5
77464844 Antisense, RP_070129_02_B10, Mouse strain C57BL/6J (56 days, male) 0.5
77371839 Antisense, RP_070116_02_E10, Mouse strain C57BL/6J (56 days, male) 0.2
542 Sense, RPS_Baylor_37003, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.3
541 Antisense, RP_Baylor_102831, Mouse strain C57BL/6J (56 days, male) 0.6
77464844 Antisense, RP_070129_02_B10, Mouse strain C57BL/6J (56 days, male) 0.4
77371839 Antisense, RP_070116_02_E10, Mouse strain C57BL/6J (56 days, male) 0.2
542 Sense, RPS_Baylor_37003, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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