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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:2153.5 nTPM
HPA:1933.3 nTPM
GTEx:2153.5 nTPM
FANTOM5:1123.5 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 1933.3
overview
Male, age 65
Small intestine sample 232
nTPM: 1497.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 2336.2
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1864.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 2035.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2153.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 2153.5
Samples: 187

Max nTPM: 4686.0
Min nTPM: 618.7
Std nTPM: 766.9
Median nTPM: 2132.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 4686.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 4510.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 4119.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 3887.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 3853.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 3815.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 3761.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 3666.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 3637.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 3557.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 3552.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 3510.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 3457.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 3408.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 3401.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 3352.5
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 3342.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 3319.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 3244.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 3174.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 3171.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 3081.5
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 3063.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 3060.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 3052.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 3011.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 2987.8
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 2973.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 2958.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 2917.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 2828.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 2826.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 2789.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 2779.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 2774.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 2749.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 2714.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 2710.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 2680.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 2675.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 2659.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 2627.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 2588.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 2581.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 2557.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 2551.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 2548.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 2543.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 2533.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 2532.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 2524.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 2501.1
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 2497.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 2485.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 2482.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 2457.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 2456.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 2453.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 2435.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 2417.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 2403.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 2368.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 2343.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 2331.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 2328.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 2319.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 2311.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 2310.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 2307.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 2307.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 2297.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 2268.8
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 2265.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 2262.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 2259.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 2239.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 2234.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 2227.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 2223.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 2218.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 2211.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 2200.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 2186.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 2186.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 2183.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 2182.5
GTEX-1192X-2526-SM-59868 50-59 years, male 2168.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 2150.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 2148.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 2145.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 2145.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 2144.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 2140.4
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 2132.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 2086.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 2057.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 2050.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 2043.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 2033.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 2030.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 2027.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 2021.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 2013.8
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 2008.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 2004.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 2001.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1986.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1980.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1949.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1945.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1938.6
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 1935.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1934.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1921.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1904.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1892.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1889.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1879.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1869.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1868.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1864.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 1863.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1841.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1827.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1810.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1795.5
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1771.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1764.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1764.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1750.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1732.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1730.5
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1716.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1702.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1699.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1690.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1682.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1661.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 1647.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1645.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1645.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1642.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1641.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1624.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1612.2
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1600.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1577.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1573.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1572.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1556.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1551.7
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1528.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1499.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1455.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1451.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1451.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1422.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1387.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1373.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1373.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1342.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1341.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1330.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1302.4
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1302.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1301.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1242.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1210.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1188.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1188.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1182.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1163.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1139.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1131.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1090.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1061.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 999.8
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 927.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 893.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 859.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 787.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 775.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 742.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 734.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 731.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 679.9
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 618.7
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1123.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 1123.5
FF:10024-101D6 15,40,85 years, mixed 1123.5

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