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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:157.4 nTPM
HPA:157.4 nTPM
FANTOM5:347.9 Scaled Tags Per Million
Pig:150.9 nTPM

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max nTPM 157.4
Sample id Sample description nTPM
Area postrema
nTPM: 116.9
2306 Male, age 80, both hemispheres 118.7
2054 Male, age 76, both hemispheres 116.9
2799 Male, age 61, both hemispheres 115.1
Cuneate nuclei
nTPM: 123.5
2376 Male, age 61, both hemispheres 132.0
2381 Male, age 80, both hemispheres 122.8
2131 Male, age 76, both hemispheres 115.9
Dorsal medullary reticular nucleus
nTPM: 124.7
2040 Female, age 85, both hemispheres 136.9
2373 Male, age 61, both hemispheres 125.1
2088 Male, age 76, both hemispheres 112.2
Dorsal motor vagal complex
nTPM: 119.1
2844 Male, age 55, unknown 140.2
2813 Female, age 72, unknown 127.8
2133 Female, age 91, both hemispheres 123.0
2643 Male, age 74, both hemispheres 120.7
2797 Male, age 61, both hemispheres 111.6
2185 Male, age 76, both hemispheres 111.4
2000 Male, age 74, unknown 110.3
2807 Female, age 85, both hemispheres 108.1
Gigantocellular reticular nuclei, medullary
nTPM: 135.9
2462 Male, age 74, both hemispheres 152.0
2022 Male, age 76, right hemisphere 143.2
2314 Male, age 61, both hemispheres 136.0
1876 Female, age 85, both hemispheres 135.1
2310 Male, age 80, both hemispheres 134.5
2387 Female, age 91, both hemispheres 114.5
Gigantocellular reticular nuclei, pars
nTPM: 132.0
2168 Male, age 76, both hemispheres 151.4
2084 Female, age 85, both hemispheres 132.5
2336 Male, age 61, both hemispheres 132.4
2706 Male, age 80, both hemispheres 122.3
2330 Male, age 80, both hemispheres 121.4
Inferior olive
nTPM: 106.1
2178 Male, age 61, both hemispheres 122.5
2628 Female, age 91, both hemispheres 116.7
2379 Male, age 80, both hemispheres 99.5
2563 Male, age 74, both hemispheres 97.4
2085 Female, age 85, both hemispheres 94.5
Lateral medullary reticular nucleus
nTPM: 126.9
2305 Male, age 74, both hemispheres 143.2
2852 Male, age 80, both hemispheres 137.5
2374 Male, age 61, both hemispheres 128.2
2044 Male, age 76, both hemispheres 122.6
2190 Female, age 85, both hemispheres 120.3
2804 Female, age 91, both hemispheres 109.5
Medial vestibular nucleus
nTPM: 126.2
2801 Male, age 74, both hemispheres 138.5
2624 Male, age 61, both hemispheres 129.1
2803 Female, age 91, both hemispheres 127.1
2743 Female, age 85, both hemispheres 123.8
2093 Male, age 80, both hemispheres 123.0
2134 Male, age 76, both hemispheres 115.6
Motor hypoglossal nucleus
nTPM: 133.1
2461 Male, age 61, both hemispheres 141.0
2132 Female, age 85, both hemispheres 137.2
2125 Female, age 91, both hemispheres 133.2
2277 Male, age 76, both hemispheres 129.5
2182 Male, age 80, both hemispheres 124.6
Nucleus ambiguus
nTPM: 129.9
2096 Female, age 85, both hemispheres 144.3
2071 Male, age 76, both hemispheres 115.5
Nucleus cuneatus
nTPM: 117.0
2562 Male, age 61, both hemispheres 128.8
2380 Male, age 80, both hemispheres 121.4
2100 Male, age 76, both hemispheres 118.2
2564 Male, age 74, both hemispheres 117.7
2808 Female, age 85, both hemispheres 116.6
2805 Female, age 91, both hemispheres 99.4
Nucleus gracilis
nTPM: 118.2
2627 Male, age 74, both hemispheres 129.0
2382 Male, age 80, both hemispheres 120.8
2299 Female, age 85, both hemispheres 104.7
Nucleus raphe magnus
nTPM: 157.4
2160 Male, age 61, both hemispheres 215.7
2172 Female, age 85, both hemispheres 176.5
2051 Male, age 76, both hemispheres 143.3
2455 Male, age 74, both hemispheres 142.9
2328 Male, age 80, both hemispheres 141.6
2459 Female, age 91, both hemispheres 124.6
Nucleus raphe obscurus
nTPM: 136.5
2800 Male, age 61, midline 145.1
2845 Female, age 85, midline 136.1
2142 Male, age 76, midline 128.3
Nucleus raphe pallidus
nTPM: 131.0
1924 Male, age 61, midline 152.7
2183 Male, age 80, midline 124.6
2145 Male, age 76, midline 115.8
Nucleus tractus solitarii
nTPM: 110.3
2656 Male, age 76, both hemispheres 134.5
2307 Male, age 80, both hemispheres 114.1
2191 Female, age 85, both hemispheres 103.1
2144 Female, age 91, right hemisphere 89.6
Parvicellular reticular nuclei
nTPM: 130.5
2558 Male, age 74, both hemispheres 149.6
2119 Male, age 80, both hemispheres 123.5
2095 Male, age 76, both hemispheres 118.5
Parvicellular reticular nuclei, medullary
nTPM: 126.9
2181 Male, age 80, left hemisphere 137.6
2189 Female, age 91, both hemispheres 125.3
2091 Female, age 85, both hemispheres 117.7
Peritrigeminal nucleus
nTPM: 133.4
2179 Male, age 61, both hemispheres 153.4
2067 Female, age 85, both hemispheres 125.5
2136 Male, age 76, both hemispheres 121.4
Prepositus hypoglossal nucleus
nTPM: 119.8
2855 Female, age 85, right hemisphere 132.7
2086 Male, age 80, both hemispheres 106.9
Spinal trigeminal nucleus, caudal
nTPM: 126.2
2312 Male, age 61, both hemispheres 140.3
2447 Male, age 76, both hemispheres 125.2
2308 Male, age 80, both hemispheres 124.3
2390 Female, age 91, both hemispheres 123.8
2642 Male, age 74, both hemispheres 117.5
Spinal trigeminal nucleus, interpolar
nTPM: 123.8
2386 Female, age 85, both hemispheres 131.6
2066 Male, age 76, right hemisphere 128.3
2033 Male, age 80, both hemispheres 123.9
2389 Female, age 91, both hemispheres 119.8
2625 Male, age 61, both hemispheres 115.6
Spinal vestibular nucleus
nTPM: 123.3
2780 Male, age 80, both hemispheres 129.4
2186 Female, age 91, both hemispheres 127.6
2806 Female, age 85, both hemispheres 124.9
2796 Male, age 61, both hemispheres 123.5
2748 Male, age 76, both hemispheres 118.3
2384 Male, age 74, both hemispheres 116.0
Ventral medullary reticular nucleus
nTPM: 128.9
2060 Male, age 76, both hemispheres 130.9
2372 Male, age 61, both hemispheres 126.8
Ventrolateral medulla, A1-C1 cell groups
nTPM: 119.2
2180 Male, age 61, both hemispheres 127.3
1986 Male, age 76, both hemispheres 126.1
2741 Female, age 85, both hemispheres 124.4
2118 Male, age 80, both hemispheres 116.0
2302 Female, age 91, both hemispheres 102.1

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 347.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 347.9
FF:10038-101F2 18-64 years, mixed 462.7
FF:10155-103A2 76 years, female 358.2
FF:10174-103C3 60 years, female 222.8

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 150.9
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 150.9
Samples: 4

Max nTPM: 163.4
Min nTPM: 127.3
Sample A Female 163.4
Sample B Female 150.8
Sample C Male 162.2
Sample D Male 127.3

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.