MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:84.4 nTPM
HPA:84.4 nTPM
GTEx:75.2 nTPM
FANTOM5:114.8 Scaled Tags Per Million
Mouse:51.2 nTPM
Allen mouse:4.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 84.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81.7
2586 Male, age 75, left hemisphere 87.5
1827 Male, age 72, unknown 85.2
2019 Male, age 18, unknown 84.2
2828 Female, age 72, unknown 84.1
2666 Male, age 74, left hemisphere 83.4
2219 Male, age 76, both hemispheres 81.3
1833 Male, age 53, unknown 78.7
1830 Male, age 51, unknown 78.5
1870 Female, age 42, unknown 77.7
2411 Female, age 72, unknown 76.1
Dorsal raphe nucleus
nTPM: 75.2
2750 Male, age 76, both hemispheres 78.6
1828 Male, age 53, unknown 76.3
2047 Male, age 72, unknown 76.1
2298 Female, age 72, unknown 73.7
2016 Female, age 72, unknown 71.3
Inferior colliculus
nTPM: 79.3
2849 Male, age 72, unknown 84.2
1848 Female, age 42, unknown 80.5
2097 Female, age 72, unknown 76.6
1890 Male, age 53, unknown 75.8
Median raphe nucleus
nTPM: 77.6
2220 Male, age 76, midline 77.6
Pedunculopontine tegmental nucleus
nTPM: 78.2
2334 Male, age 80, both hemispheres 81.5
1921 Female, age 85, both hemispheres 78.0
2338 Male, age 61, both hemispheres 75.1
Periaquaductal grey, anterior
nTPM: 81.9
2502 Female, age 75, unknown 85.0
1795 Male, age 51, unknown 80.5
1947 Male, age 18, unknown 80.3
Periaquaductal grey, dorsal
nTPM: 74.9
1840 Male, age 53, unknown 76.5
1831 Male, age 72, unknown 75.0
2464 Female, age 72, unknown 74.9
2850 Male, age 76, both hemispheres 73.2
Periaquaductal grey, lateral
nTPM: 73.3
2053 Male, age 18, unknown 75.3
2140 Male, age 76, both hemispheres 73.5
2272 Male, age 74, both hemispheres 71.3
Pretectal area
nTPM: 84.4
1944 Female, age 72, unknown 99.7
1817 Female, age 42, unknown 96.1
2007 Male, age 72, unknown 95.1
1816 Male, age 51, unknown 95.0
1815 Male, age 53, unknown 85.4
2667 Female, age 75, unknown 80.0
2407 Male, age 75, both hemispheres 78.1
2825 Male, age 18, unknown 77.6
2316 Male, age 76, right hemisphere 76.5
2224 Female, age 72, unknown 74.2
2273 Male, age 74, both hemispheres 70.1
Red nucleus
nTPM: 79.7
2588 Male, age 74, left hemisphere 88.8
2584 Male, age 75, left hemisphere 87.8
2785 Male, age 18, unknown 86.7
2823 Male, age 76, right hemisphere 80.1
2503 Female, age 72, unknown 78.2
2769 Male, age 72, unknown 77.8
1865 Male, age 51, unknown 77.0
2725 Female, age 75, unknown 76.7
1904 Male, age 53, unknown 76.5
1821 Female, age 72, unknown 75.9
1954 Female, age 42, unknown 75.6
2227 Male, age 72, unknown 75.3
Substantia nigra
nTPM: 80.6
1889 Female, age 72, unknown 88.9
2665 Male, age 74, both hemispheres 87.0
1941 Male, age 53, unknown 84.0
2590 Female, age 75, unknown 83.6
2583 Male, age 75, right hemisphere 80.9
1851 Male, age 51, unknown 80.4
1916 Female, age 42, unknown 80.2
2699 Male, age 18, unknown 74.9
2409 Female, age 72, unknown 74.4
2241 Male, age 72, unknown 71.7
Superior colliculus
nTPM: 81.6
2087 Female, age 72, unknown 92.5
1796 Male, age 53, unknown 84.8
2261 Male, age 18, unknown 82.3
1895 Male, age 76, right hemisphere 81.8
2668 Female, age 75, unknown 80.9
1913 Female, age 42, unknown 80.4
2664 Male, age 75, both hemispheres 80.1
1839 Male, age 51, unknown 78.8
1995 Male, age 72, unknown 78.1
2587 Male, age 74, left hemisphere 76.3
Ventral tegmental area
nTPM: 76.7
2218 Male, age 76, both hemispheres 78.4
2410 Female, age 72, unknown 78.0
1915 Female, age 42, unknown 77.4
1942 Male, age 51, unknown 76.4
2223 Female, age 72, unknown 75.8
2021 Male, age 53, unknown 74.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 75.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 75.2
Samples: 139

Max nTPM: 138.1
Min nTPM: 37.4
Std nTPM: 15.1
Median nTPM: 75.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 138.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 111.5
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 109.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 103.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 101.7
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 98.4
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 98.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 98.2
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 98.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 98.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 97.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 114.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 114.8
FF:10158-103A5 76 years, female 114.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 51.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.2
Samples: 4

Max nTPM: 54.2
Min nTPM: 49.4
Sample A Male 54.2
Sample B Male 49.4
Sample C Female 50.1
Sample D Female 51.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.8
68632978 Antisense, RP_050125_02_B11, Mouse strain C57BL/6J (56 days, male) 4.8

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