BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:20.0 nTPM
HPA:20.0 nTPM
GTEx:8.0 nTPM
FANTOM5:7.9 Scaled Tags Per Million
Pig:4.5 nTPM
Mouse:18.6 nTPM
Allen mouse:0.7 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 20.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.0
1781 Male, age 74, unknown 0.0
1854 Male, age 80, left hemisphere 0.0
1857 Female, age 85, left hemisphere 0.0
2288 Male, age 75, left hemisphere 0.0
2289 Male, age 61, right hemisphere 0.0
2290 Female, age 72, unknown 0.0
2481 Female, age 94, left hemisphere 0.0
2846 Female, age 79, unknown 0.0
Claustrum
nTPM: 20.0
2568 Male, age 61, both hemispheres 30.8
2645 Female, age 72, unknown 28.5
2198 Male, age 80, both hemispheres 27.2
2284 Female, age 91, both hemispheres 24.4
2491 Male, age 75, both hemispheres 23.8
1956 Male, age 74, unknown 16.7
2292 Female, age 85, both hemispheres 13.0
2196 Female, age 79, unknown 10.2
2392 Female, age 94, both hemispheres 5.1
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 0.0
1783 Male, age 74, unknown 0.0
1806 Female, age 85, left hemisphere 0.0
1856 Female, age 91, right hemisphere 0.0
2286 Male, age 75, left hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
2698 Female, age 72, unknown 0.0
2732 Male, age 80, right hemisphere 0.0
2824 Male, age 61, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.0
2393 Male, age 80, right hemisphere 0.0
2484 Female, age 94, left hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 11.5
2029 Male, age 61, right hemisphere 21.4
2195 Female, age 85, both hemispheres 14.1
2775 Male, age 80, right hemisphere 13.5
1812 Female, age 91, both hemispheres 8.7
1979 Male, age 74, unknown 0.0
Olfactory tubercle
nTPM: 11.1
1998 Female, age 91, both hemispheres 13.8
2856 Male, age 75, right hemisphere 12.1
1846 Male, age 80, right hemisphere 10.7
2487 Female, age 94, left hemisphere 7.6
Putamen
nTPM: 0.0
1829 Male, age 74, unknown 0.0
1838 Male, age 80, right hemisphere 0.0
1937 Female, age 91, right hemisphere 0.0
2466 Female, age 79, unknown 0.0
2482 Female, age 94, left hemisphere 0.0
2489 Female, age 72, unknown 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 8.7
1960 Male, age 74, unknown 25.4
2031 Female, age 72, unknown 16.2
2629 Female, age 94, right hemisphere 7.2
2059 Female, age 85, both hemispheres 6.4
2009 Female, age 91, both hemispheres 6.0
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 8.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 8.0
Samples: 246

Max nTPM: 40.7
Min nTPM: 2.0
Std nTPM: 3.5
Median nTPM: 7.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 40.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 21.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 18.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 14.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 14.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 14.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 14.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 13.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 13.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 13.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 13.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 6.7
Samples: 246

Max nTPM: 32.5
Min nTPM: 1.5
Std nTPM: 3.5
Median nTPM: 6.1
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 32.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 28.8
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 21.9
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 16.8
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 15.1
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 13.6
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 13.2
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 13.0
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 13.0
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 12.9
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 12.7
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Brain - Putamen (basal ganglia)
Average nTPM: 6.5
Samples: 205

Max nTPM: 30.5
Min nTPM: 1.5
Std nTPM: 2.7
Median nTPM: 6.2
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 30.5
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 15.0
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 12.6
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 12.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 11.7
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 11.2
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 10.9
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 10.8
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 10.7
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 10.5
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 10.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 7.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1.7
FF:10164-103B2 76 years, female 1.7
Globus pallidus
Scaled Tags Per Million: 0.5
FF:10175-103C4 60 years, female 0.7
FF:10161-103A8 76 years, female 0.3
Nucleus accumbens
Scaled Tags Per Million: 7.9
FF:10037-101F1 23-56 years, mixed 7.9
Putamen
Scaled Tags Per Million: 1.4
FF:10176-103C5 60 years, female 1.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 4.5
Pig sample Sample description nTPM
Caudate
nTPM: 2.6
Samples: 4

Max nTPM: 3.3
Min nTPM: 1.8
Sample A Female 2.4
Sample B Female 3.0
Sample C Male 3.3
Sample D Male 1.8
Putamen
nTPM: 2.5
Samples: 4

Max nTPM: 4.1
Min nTPM: 1.5
Sample A Female 4.1
Sample B Female 1.5
Sample C Male 1.9
Sample D Male 2.3
Septum
nTPM: 4.0
Samples: 4

Max nTPM: 4.7
Min nTPM: 3.5
Sample A Female 3.5
Sample B Female 3.5
Sample C Male 4.7
Sample D Male 4.1
Ventral pallidum
nTPM: 4.5
Samples: 4

Max nTPM: 8.2
Min nTPM: 2.0
Sample A Female 2.0
Sample B Female 4.4
Sample C Male 8.2
Sample D Male 3.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 18.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 5.5
Samples: 4

Max nTPM: 8.9
Min nTPM: 2.3
Sample A Male 2.3
Sample B Male 3.1
Sample C Female 8.9
Sample D Female 7.5
Septum
nTPM: 11.6
Samples: 4

Max nTPM: 18.7
Min nTPM: 4.7
Sample A Male 18.7
Sample B Male 9.8
Sample C Female 13.3
Sample D Female 4.7
Ventral forebrain
nTPM: 18.6
Samples: 4

Max nTPM: 23.1
Min nTPM: 12.1
Sample A Male 21.8
Sample B Male 12.1
Sample C Female 23.1
Sample D Female 17.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.7
69012647 Antisense, RP_050309_01_B11, Mouse strain C57BL/6J (56 days, male) 1.0
72080145 Antisense, RP_051017_03_C10, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.3
69012647 Antisense, RP_050309_01_B11, Mouse strain C57BL/6J (56 days, male) 0.6
72080145 Antisense, RP_051017_03_C10, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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