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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:110.7 nTPM
HPA:110.7 nTPM
GTEx:144.3 nTPM
FANTOM5:82.0 Scaled Tags Per Million
Pig:82.9 nTPM
Mouse:367.2 nTPM
Allen mouse:14.8 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 110.7
Sample id Sample description nTPM
Amygdala
nTPM: 100.5
2814 Male, age 76, right hemisphere 106.2
1987 Female, age 91, left hemisphere 104.4
2517 Female, age 94, left hemisphere 101.1
2514 Male, age 75, right hemisphere 100.2
2695 Female, age 67, right hemisphere 90.6
Basal amygdala
nTPM: 96.7
2685 Female, age 94, left hemisphere 103.2
2110 Male, age 80, left hemisphere 101.1
2243 Female, age 91, right hemisphere 98.7
1955 Male, age 76, both hemispheres 95.8
2609 Male, age 75, right hemisphere 95.0
2827 Female, age 67, right hemisphere 86.3
Central amygdala
nTPM: 100.1
2826 Female, age 94, left hemisphere 108.5
1905 Male, age 76, both hemispheres 104.7
2239 Male, age 80, left hemisphere 98.7
2515 Male, age 75, right hemisphere 95.0
2701 Female, age 91, right hemisphere 93.5
Corticomedial amygdala
nTPM: 98.3
2829 Male, age 80, left hemisphere 110.1
2242 Female, age 91, right hemisphere 100.9
2429 Female, age 94, left hemisphere 100.2
2428 Male, age 75, right hemisphere 100.0
2240 Male, age 76, both hemispheres 90.7
2535 Female, age 67, right hemisphere 87.6
Lateral amygdala
nTPM: 99.2
2534 Female, age 94, left hemisphere 114.0
1883 Male, age 76, both hemispheres 108.5
2516 Male, age 75, right hemisphere 99.6
2255 Female, age 91, right hemisphere 93.7
2256 Male, age 80, left hemisphere 92.4
2830 Female, age 67, right hemisphere 87.1
Stria terminalis, bed nucleus
nTPM: 110.7
1974 Female, age 91, both hemispheres 129.9
2486 Female, age 94, both hemispheres 106.9
2201 Male, age 74, unknown 95.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 144.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 144.3
Samples: 152

Max nTPM: 453.2
Min nTPM: 70.3
Std nTPM: 57.2
Median nTPM: 135.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 453.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 346.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 342.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 331.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 259.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 256.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 238.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 235.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 234.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 231.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 220.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 212.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 210.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 210.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 206.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 205.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 205.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 203.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 202.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 202.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 201.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 200.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 200.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 200.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 195.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 192.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 191.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 190.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 184.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 183.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 181.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 179.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 178.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 177.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 174.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 173.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 170.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 169.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 166.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 166.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 165.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 165.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 165.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 164.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 162.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 162.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 159.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 158.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 156.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 155.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 155.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 154.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 152.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 152.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 151.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 151.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 151.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 150.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 147.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 147.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 144.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 144.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 143.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 142.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 142.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 141.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 141.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 139.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 138.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 138.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 138.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 138.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 137.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 137.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 137.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 136.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 135.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 134.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 133.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 133.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 131.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 128.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 128.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 128.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 125.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 123.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 123.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 123.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 122.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 121.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 120.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 120.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 120.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 120.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 118.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 118.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 117.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 115.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 115.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 113.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 112.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 112.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 112.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 112.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 111.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 111.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 110.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 109.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 109.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 109.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 107.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 107.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 106.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 106.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 106.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 104.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 103.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 102.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 101.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 100.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 99.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 98.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 97.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 96.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 96.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 95.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 93.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 93.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 92.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 91.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 91.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 90.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 90.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 89.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 89.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 89.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 85.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 84.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 83.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 83.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 81.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 79.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 78.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 77.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 77.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 76.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 75.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 73.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 73.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 71.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 70.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 70.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 82.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 82.0
FF:10151-102I7 76 years, female 82.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 82.9
Pig sample Sample description nTPM
Amygdala
nTPM: 82.9
Samples: 4

Max nTPM: 126.4
Min nTPM: 64.5
Sample A Female 126.4
Sample B Female 64.5
Sample C Male 72.3
Sample D Male 68.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 367.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 367.2
Samples: 4

Max nTPM: 406.2
Min nTPM: 336.9
Sample A Male 366.2
Sample B Male 336.9
Sample C Female 406.2
Sample D Female 359.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 14.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 14.8
71836889 Antisense, RP_051017_02_F07, Mouse strain C57BL/6J (56 days, male) 15.5
68743955 Antisense, RP_050203_01_H10, Mouse strain C57BL/6J (56 days, male) 14.1

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