BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:7.5 nTPM
HPA:7.5 nTPM
GTEx:6.8 nTPM
FANTOM5:67.1 Scaled Tags Per Million
Pig:13.5 nTPM
Mouse:15.4 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 7.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.1
2288 Male, age 75, left hemisphere 5.3
1781 Male, age 74, unknown 3.0
2481 Female, age 94, left hemisphere 1.0
1854 Male, age 80, left hemisphere 0.0
1857 Female, age 85, left hemisphere 0.0
2289 Male, age 61, right hemisphere 0.0
2290 Female, age 72, unknown 0.0
2846 Female, age 79, unknown 0.0
Claustrum
nTPM: 7.0
2198 Male, age 80, both hemispheres 10.7
2284 Female, age 91, both hemispheres 10.7
2568 Male, age 61, both hemispheres 10.5
2491 Male, age 75, both hemispheres 8.2
2645 Female, age 72, unknown 6.7
2392 Female, age 94, both hemispheres 6.5
1956 Male, age 74, unknown 4.2
2292 Female, age 85, both hemispheres 4.2
2196 Female, age 79, unknown 1.5
Globus pallidus, externus
nTPM: 5.6
2567 Female, age 72, unknown 10.4
2772 Female, age 79, unknown 7.2
2395 Male, age 75, both hemispheres 6.7
1996 Male, age 80, right hemisphere 3.4
2646 Male, age 61, right hemisphere 0.1
Globus pallidus, internus
nTPM: 5.5
1818 Male, age 74, unknown 8.4
2287 Male, age 75, right hemisphere 7.7
2566 Female, age 72, unknown 7.5
2111 Female, age 85, right hemisphere 7.2
2037 Male, age 80, right hemisphere 3.6
2778 Female, age 91, both hemispheres 2.8
2483 Female, age 94, right hemisphere 1.3
Nucleus accumbens
nTPM: 0.7
2286 Male, age 75, left hemisphere 3.7
1856 Female, age 91, right hemisphere 1.6
1783 Male, age 74, unknown 0.3
2698 Female, age 72, unknown 0.3
2824 Male, age 61, right hemisphere 0.3
1806 Female, age 85, left hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
2732 Male, age 80, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.7
2821 Male, age 75, both hemispheres 1.5
2393 Male, age 80, right hemisphere 1.2
2484 Female, age 94, left hemisphere 0.3
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 5.0
2029 Male, age 61, right hemisphere 8.4
1812 Female, age 91, both hemispheres 7.2
2775 Male, age 80, right hemisphere 6.9
2195 Female, age 85, both hemispheres 2.7
1979 Male, age 74, unknown 0.0
Olfactory tubercle
nTPM: 7.5
1998 Female, age 91, both hemispheres 12.1
2487 Female, age 94, left hemisphere 8.1
2856 Male, age 75, right hemisphere 5.1
1846 Male, age 80, right hemisphere 4.5
Putamen
nTPM: 2.2
2647 Male, age 75, left hemisphere 6.1
1829 Male, age 74, unknown 3.1
2489 Female, age 72, unknown 2.6
1937 Female, age 91, right hemisphere 1.4
1838 Male, age 80, right hemisphere 1.2
2466 Female, age 79, unknown 1.1
2482 Female, age 94, left hemisphere 0.0
Septal nuclei
nTPM: 3.1
2009 Female, age 91, both hemispheres 6.0
2629 Female, age 94, right hemisphere 4.7
1960 Male, age 74, unknown 4.2
2031 Female, age 72, unknown 4.0
2059 Female, age 85, both hemispheres 1.9
2394 Male, age 61, left hemisphere 0.7
2199 Male, age 80, right hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 6.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 6.4
Samples: 246

Max nTPM: 18.8
Min nTPM: 1.8
Std nTPM: 1.8
Median nTPM: 6.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 18.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 11.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 10.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 10.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 10.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 9.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 9.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 9.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 9.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 9.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 9.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 5.1
Samples: 246

Max nTPM: 12.0
Min nTPM: 0.9
Std nTPM: 1.8
Median nTPM: 5.1
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 12.0
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 11.5
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 11.1
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 11.1
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 10.5
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 10.3
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 9.9
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 9.5
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 8.8
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 8.7
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 8.6
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Brain - Putamen (basal ganglia)
Average nTPM: 6.8
Samples: 205

Max nTPM: 14.1
Min nTPM: 2.2
Std nTPM: 2.0
Median nTPM: 6.9
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 14.1
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 13.4
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 11.8
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 11.6
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 10.5
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 10.3
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 10.1
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 10.1
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 10.0
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 10.0
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 10.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 19.7
FF:10164-103B2 76 years, female 19.7
Globus pallidus
Scaled Tags Per Million: 43.5
FF:10175-103C4 60 years, female 59.2
FF:10161-103A8 76 years, female 27.8
Nucleus accumbens
Scaled Tags Per Million: 67.1
FF:10037-101F1 23-56 years, mixed 67.1
Putamen
Scaled Tags Per Million: 43.8
FF:10176-103C5 60 years, female 43.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 13.5
Pig sample Sample description nTPM
Caudate
nTPM: 9.5
Samples: 4

Max nTPM: 10.8
Min nTPM: 8.4
Sample A Female 8.4
Sample B Female 9.7
Sample C Male 10.8
Sample D Male 9.1
Putamen
nTPM: 10.8
Samples: 4

Max nTPM: 13.1
Min nTPM: 8.9
Sample A Female 11.1
Sample B Female 8.9
Sample C Male 13.1
Sample D Male 10.1
Septum
nTPM: 13.6
Samples: 4

Max nTPM: 22.7
Min nTPM: 9.9
Sample A Female 9.9
Sample B Female 10.0
Sample C Male 22.7
Sample D Male 11.6
Ventral pallidum
nTPM: 11.9
Samples: 4

Max nTPM: 22.6
Min nTPM: 7.5
Sample A Female 8.6
Sample B Female 8.9
Sample C Male 22.6
Sample D Male 7.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 15.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 10.6
Samples: 4

Max nTPM: 11.3
Min nTPM: 10.1
Sample A Male 10.3
Sample B Male 10.1
Sample C Female 11.3
Sample D Female 10.6
Septum
nTPM: 15.4
Samples: 4

Max nTPM: 18.1
Min nTPM: 12.3
Sample A Male 18.1
Sample B Male 12.3
Sample C Female 15.5
Sample D Female 15.6
Ventral forebrain
nTPM: 14.7
Samples: 4

Max nTPM: 16.9
Min nTPM: 13.4
Sample A Male 13.4
Sample B Male 16.9
Sample C Female 13.4
Sample D Female 15.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
1849 Antisense, RP_040507_01_H09, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
1849 Antisense, RP_040507_01_H09, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

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