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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:91.6 nTPM
HPA:91.6 nTPM
GTEx:78.1 nTPM
FANTOM5:153.9 Scaled Tags Per Million
Pig:42.9 nTPM
Mouse:316.4 nTPM
Allen mouse:27.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 91.6
Sample id Sample description nTPM
Amygdala
nTPM: 35.6
1987 Female, age 91, left hemisphere 72.4
2517 Female, age 94, left hemisphere 61.7
2814 Male, age 76, right hemisphere 32.2
2514 Male, age 75, right hemisphere 12.0
2695 Female, age 67, right hemisphere 0.0
Basal amygdala
nTPM: 83.4
2243 Female, age 91, right hemisphere 173.2
2685 Female, age 94, left hemisphere 109.0
2110 Male, age 80, left hemisphere 90.6
1955 Male, age 76, both hemispheres 51.6
2827 Female, age 67, right hemisphere 38.0
2609 Male, age 75, right hemisphere 37.8
Central amygdala
nTPM: 55.9
2701 Female, age 91, right hemisphere 84.6
2239 Male, age 80, left hemisphere 83.1
2826 Female, age 94, left hemisphere 63.3
1905 Male, age 76, both hemispheres 31.0
2515 Male, age 75, right hemisphere 17.5
Corticomedial amygdala
nTPM: 91.6
2242 Female, age 91, right hemisphere 157.1
2829 Male, age 80, left hemisphere 128.7
2429 Female, age 94, left hemisphere 104.2
2535 Female, age 67, right hemisphere 79.8
2240 Male, age 76, both hemispheres 53.5
2428 Male, age 75, right hemisphere 26.2
Lateral amygdala
nTPM: 46.5
2534 Female, age 94, left hemisphere 90.2
2255 Female, age 91, right hemisphere 72.9
1883 Male, age 76, both hemispheres 61.7
2256 Male, age 80, left hemisphere 36.9
2830 Female, age 67, right hemisphere 12.9
2516 Male, age 75, right hemisphere 4.2
Stria terminalis, bed nucleus
nTPM: 90.7
2486 Female, age 94, both hemispheres 106.4
1974 Female, age 91, both hemispheres 101.7
2201 Male, age 74, unknown 64.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 78.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 78.1
Samples: 152

Max nTPM: 188.0
Min nTPM: 1.5
Std nTPM: 35.8
Median nTPM: 73.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 188.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 184.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 165.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 159.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 152.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 145.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 144.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 141.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 137.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 137.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 136.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 132.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 131.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 131.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 129.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 129.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 127.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 123.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 120.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 118.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 117.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 117.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 117.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 115.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 111.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 111.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 108.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 106.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 106.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 105.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 105.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 105.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 103.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 103.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 102.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 101.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 101.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 101.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 100.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 100.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 98.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 98.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 97.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 97.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 96.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 96.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 94.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 94.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 94.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 93.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 93.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 92.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 91.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 91.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 91.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 91.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 90.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 90.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 90.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 87.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 86.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 86.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 85.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 83.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 83.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 82.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 82.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 81.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 80.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 80.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 76.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 76.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 75.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 74.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 73.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 73.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 72.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 72.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 72.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 71.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 71.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 71.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 70.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 70.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 69.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 68.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 68.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 66.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 65.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 65.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 64.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 62.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 62.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 62.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 62.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 62.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 61.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 60.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 60.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 60.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 59.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 57.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 57.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 57.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 57.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 53.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 53.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 53.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 53.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 53.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 52.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 52.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 51.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 50.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 50.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 49.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 49.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 49.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 47.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 47.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 47.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 46.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 45.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 45.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 44.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 43.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 43.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 43.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 42.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 41.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 41.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 41.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 41.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 40.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 39.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 37.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 37.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 36.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 35.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 35.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 34.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 34.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 32.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 30.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 27.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 23.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 21.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 16.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 16.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 11.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 6.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 153.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 153.9
FF:10151-102I7 76 years, female 153.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 42.9
Pig sample Sample description nTPM
Amygdala
nTPM: 42.9
Samples: 4

Max nTPM: 61.6
Min nTPM: 26.6
Sample A Female 61.6
Sample B Female 26.6
Sample C Male 44.3
Sample D Male 39.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 316.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 316.4
Samples: 4

Max nTPM: 346.4
Min nTPM: 281.6
Sample A Male 331.1
Sample B Male 346.4
Sample C Female 281.6
Sample D Female 306.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 27.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 27.3
71381133 Antisense, RP_050510_03_F10, Mouse strain C57BL/6J (56 days, male) 27.3

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