BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:47.1 nTPM
HPA:47.1 nTPM
GTEx:36.2 nTPM
FANTOM5:54.0 Scaled Tags Per Million
Pig:35.8 nTPM
Mouse:14.6 nTPM
Allen mouse:0.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA024221
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 47.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 39.5
2290 Female, age 72, unknown 41.6
2481 Female, age 94, left hemisphere 41.5
1857 Female, age 85, left hemisphere 41.4
1854 Male, age 80, left hemisphere 39.8
2846 Female, age 79, unknown 38.7
2288 Male, age 75, left hemisphere 38.2
2289 Male, age 61, right hemisphere 37.5
1781 Male, age 74, unknown 37.1
Claustrum
nTPM: 36.6
2292 Female, age 85, both hemispheres 39.9
2196 Female, age 79, unknown 37.5
1956 Male, age 74, unknown 37.3
2645 Female, age 72, unknown 37.3
2198 Male, age 80, both hemispheres 36.4
2284 Female, age 91, both hemispheres 35.7
2392 Female, age 94, both hemispheres 35.2
2491 Male, age 75, both hemispheres 35.0
2568 Male, age 61, both hemispheres 34.8
Globus pallidus, externus
nTPM: 47.1
2646 Male, age 61, right hemisphere 50.2
1996 Male, age 80, right hemisphere 49.9
2567 Female, age 72, unknown 49.8
2772 Female, age 79, unknown 43.9
2395 Male, age 75, both hemispheres 41.6
Globus pallidus, internus
nTPM: 46.3
2566 Female, age 72, unknown 48.4
2037 Male, age 80, right hemisphere 48.2
2111 Female, age 85, right hemisphere 48.0
1818 Male, age 74, unknown 45.5
2483 Female, age 94, right hemisphere 45.0
2287 Male, age 75, right hemisphere 44.9
2778 Female, age 91, both hemispheres 44.0
Nucleus accumbens
nTPM: 39.0
2698 Female, age 72, unknown 43.3
1806 Female, age 85, left hemisphere 40.7
2391 Female, age 94, left hemisphere 40.2
2732 Male, age 80, right hemisphere 39.1
1783 Male, age 74, unknown 38.9
2286 Male, age 75, left hemisphere 38.5
2824 Male, age 61, right hemisphere 36.4
1856 Female, age 91, right hemisphere 35.2
Nucleus basalis of Meynert
nTPM: 41.2
2569 Male, age 61, both hemispheres 52.5
2484 Female, age 94, left hemisphere 37.8
2393 Male, age 80, right hemisphere 37.7
2821 Male, age 75, both hemispheres 37.1
Nucleus of the diagonal band
nTPM: 35.0
1979 Male, age 74, unknown 39.4
1812 Female, age 91, both hemispheres 35.9
2195 Female, age 85, both hemispheres 34.1
2029 Male, age 61, right hemisphere 32.9
2775 Male, age 80, right hemisphere 32.6
Olfactory tubercle
nTPM: 33.3
2856 Male, age 75, right hemisphere 35.6
1846 Male, age 80, right hemisphere 34.7
2487 Female, age 94, left hemisphere 31.7
1998 Female, age 91, both hemispheres 31.2
Putamen
nTPM: 39.5
2489 Female, age 72, unknown 43.2
2647 Male, age 75, left hemisphere 42.9
1829 Male, age 74, unknown 39.9
2482 Female, age 94, left hemisphere 39.9
1838 Male, age 80, right hemisphere 37.7
2466 Female, age 79, unknown 36.6
1937 Female, age 91, right hemisphere 35.9
Septal nuclei
nTPM: 35.9
2199 Male, age 80, right hemisphere 40.0
2394 Male, age 61, left hemisphere 38.9
2059 Female, age 85, both hemispheres 37.5
2629 Female, age 94, right hemisphere 34.6
1960 Male, age 74, unknown 33.6
2009 Female, age 91, both hemispheres 33.5
2031 Female, age 72, unknown 33.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 36.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 33.8
Samples: 246

Max nTPM: 59.4
Min nTPM: 10.9
Std nTPM: 8.7
Median nTPM: 32.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 59.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 58.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 57.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 57.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 55.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 55.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 54.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 52.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 51.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 51.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 50.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 32.2
Samples: 246

Max nTPM: 74.0
Min nTPM: 18.3
Std nTPM: 9.6
Median nTPM: 28.9
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 74.0
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 64.7
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 63.3
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 62.7
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 55.6
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 54.3
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 53.7
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 53.6
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 53.5
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 53.2
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 53.0
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Brain - Putamen (basal ganglia)
Average nTPM: 36.2
Samples: 205

Max nTPM: 61.3
Min nTPM: 17.1
Std nTPM: 9.7
Median nTPM: 34.5
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 61.3
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 60.6
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 59.8
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 59.0
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 58.3
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 58.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 57.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 56.5
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 56.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 55.9
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 55.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 54.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 51.6
FF:10164-103B2 76 years, female 51.6
Globus pallidus
Scaled Tags Per Million: 54.0
FF:10161-103A8 76 years, female 72.6
FF:10175-103C4 60 years, female 35.5
Nucleus accumbens
Scaled Tags Per Million: 33.7
FF:10037-101F1 23-56 years, mixed 33.7
Putamen
Scaled Tags Per Million: 45.3
FF:10176-103C5 60 years, female 45.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 35.8
Pig sample Sample description nTPM
Caudate
nTPM: 31.1
Samples: 4

Max nTPM: 33.9
Min nTPM: 27.3
Sample A Female 27.3
Sample B Female 33.3
Sample C Male 33.9
Sample D Male 29.9
Putamen
nTPM: 35.8
Samples: 4

Max nTPM: 38.6
Min nTPM: 31.4
Sample A Female 37.9
Sample B Female 31.4
Sample C Male 35.3
Sample D Male 38.6
Septum
nTPM: 34.1
Samples: 4

Max nTPM: 39.8
Min nTPM: 31.8
Sample A Female 31.8
Sample B Female 32.9
Sample C Male 32.0
Sample D Male 39.8
Ventral pallidum
nTPM: 31.5
Samples: 4

Max nTPM: 34.9
Min nTPM: 25.0
Sample A Female 25.0
Sample B Female 34.9
Sample C Male 34.4
Sample D Male 31.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 14.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 14.7
Samples: 4

Max nTPM: 16.0
Min nTPM: 13.3
Sample A Male 14.4
Sample B Male 13.3
Sample C Female 14.9
Sample D Female 16.0
Septum
nTPM: 11.8
Samples: 4

Max nTPM: 13.4
Min nTPM: 10.4
Sample A Male 10.4
Sample B Male 11.1
Sample C Female 12.2
Sample D Female 13.4
Ventral forebrain
nTPM: 11.6
Samples: 4

Max nTPM: 12.6
Min nTPM: 9.7
Sample A Male 12.1
Sample B Male 12.6
Sample C Female 9.7
Sample D Female 11.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.9
75197510 Antisense, RP_060502_01_A10, Mouse strain C57BL/6J (56 days, male) 0.9
Pallidum
Expression energy: 0.7
75197510 Antisense, RP_060502_01_A10, Mouse strain C57BL/6J (56 days, male) 0.7

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