HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:40.2 nTPM
HPA:40.2 nTPM
GTEx:6.1 nTPM
FANTOM5:161.8 Scaled Tags Per Million
Pig:82.2 nTPM
Mouse:90.1 nTPM
Allen mouse:4.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA040431Antibody CAB016118
Glial cells Not detectedLow
Neuronal cells LowNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 40.2
Sample id Sample description nTPM
Hippocampus
nTPM: 3.2
2529 Female, age 94, left hemisphere 13.8
1911 Female, age 85, right hemisphere 2.8
1898 Male, age 80, left hemisphere 2.7
2148 Female, age 91, left hemisphere 0.1
1855 Male, age 76, left hemisphere 0.0
2621 Female, age 67, right hemisphere 0.0
Dentate gyrus
nTPM: 9.8
2246 Female, age 85, both hemispheres 33.2
2531 Female, age 67, both hemispheres 18.4
2528 Male, age 74, both hemispheres 7.0
1927 Female, age 91, both hemispheres 0.0
2010 Male, age 76, both hemispheres 0.0
2530 Female, age 94, left hemisphere 0.0
Entorhinal gyrus
nTPM: 27.5
1938 Female, age 85, left hemisphere 46.2
2764 Male, age 80, right hemisphere 37.4
1787 Male, age 76, left hemisphere 31.9
2613 Female, age 94, left hemisphere 30.0
2686 Male, age 75, right hemisphere 13.2
2117 Female, age 91, right hemisphere 6.0
Hippocampus, CA1
nTPM: 16.5
2082 Female, age 91, right hemisphere 35.6
2527 Male, age 74, both hemispheres 18.6
2045 Male, age 76, both hemispheres 17.2
2749 Male, age 80, left hemisphere 11.1
1873 Female, age 85, both hemispheres 0.0
Hippocampus, CA2
nTPM: 9.7
1940 Female, age 85, left hemisphere 27.6
2113 Female, age 91, right hemisphere 16.5
2249 Male, age 74, both hemispheres 13.1
1892 Male, age 76, both hemispheres 1.0
1963 Male, age 80, left hemisphere 0.0
2437 Female, age 94, left hemisphere 0.0
Hippocampus, CA3
nTPM: 17.1
2620 Female, age 94, left hemisphere 29.2
2137 Male, age 80, left hemisphere 22.9
1891 Female, age 85, both hemispheres 14.9
1867 Male, age 76, both hemispheres 12.1
2861 Female, age 67, both hemispheres 12.1
2436 Male, age 74, both hemispheres 11.1
Parahippocampal cortex
nTPM: 21.5
1850 Male, age 80, both hemispheres 49.0
1933 Female, age 85, both hemispheres 39.5
2693 Female, age 94, both hemispheres 25.3
2250 Female, age 67, right hemisphere 19.6
2692 Male, age 74, both hemispheres 18.9
2018 Male, age 76, both hemispheres 16.8
2622 Female, age 67, right hemisphere 14.6
1990 Female, age 91, right hemisphere 13.9
2532 Female, age 72, left hemisphere 8.9
2245 Female, age 91, both hemispheres 8.5
Perirhinal gyrus
nTPM: 40.2
1847 Female, age 91, left hemisphere 50.6
1794 Male, age 80, right hemisphere 50.1
1841 Female, age 85, right hemisphere 37.1
2521 Female, age 94, right hemisphere 31.8
2848 Male, age 76, right hemisphere 31.5
Subiculum
nTPM: 16.9
1977 Female, age 85, both hemispheres 41.1
2438 Female, age 94, left hemisphere 17.4
1901 Male, age 80, both hemispheres 15.6
2619 Male, age 74, both hemispheres 14.8
2729 Female, age 91, right hemisphere 9.0
2042 Male, age 76, both hemispheres 3.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 6.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 6.1
Samples: 197

Max nTPM: 18.8
Min nTPM: 1.9
Std nTPM: 3.1
Median nTPM: 5.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 18.8
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 18.2
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 18.1
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 17.4
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 15.0
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 14.1
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 13.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 13.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 12.6
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 12.5
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 12.3
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 161.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 161.8
FF:10169-103B7 60 years, female 170.5
FF:10153-102I9 76 years, female 153.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 82.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 51.0
Samples: 4

Max nTPM: 64.6
Min nTPM: 41.1
Sample A Female 46.9
Sample B Female 64.6
Sample C Male 51.3
Sample D Male 41.1
Entorhinal cortex
nTPM: 82.3
Samples: 4

Max nTPM: 96.7
Min nTPM: 68.3
Sample A Female 96.7
Sample B Female 68.3
Sample C Male 83.5
Sample D Male 80.5
Subiculum
nTPM: 67.6
Samples: 4

Max nTPM: 79.8
Min nTPM: 60.1
Sample A Female 79.8
Sample B Female 61.8
Sample C Male 68.5
Sample D Male 60.1
Ventral hippocampus
nTPM: 55.3
Samples: 4

Max nTPM: 66.6
Min nTPM: 38.3
Sample A Female 38.3
Sample B Female 54.5
Sample C Male 66.6
Sample D Male 61.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 90.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 90.1
Samples: 4

Max nTPM: 141.3
Min nTPM: 64.6
Sample A Male 71.4
Sample B Male 83.1
Sample C Female 64.6
Sample D Female 141.3
Hippocampal formation
nTPM: 23.2
Samples: 4

Max nTPM: 38.1
Min nTPM: 12.6
Sample A Male 38.1
Sample B Male 19.8
Sample C Female 12.6
Sample D Female 22.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.2
74735253 Antisense, RP_060302_01_C08, Mouse strain C57BL/6J (56 days, male) 4.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.