MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:25.6 nTPM
HPA:25.6 nTPM
GTEx:25.6 nTPM
FANTOM5:78.8 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.4
2666 Male, age 74, left hemisphere 31.4
1827 Male, age 72, unknown 23.5
2019 Male, age 18, unknown 22.6
2411 Female, age 72, unknown 20.7
2219 Male, age 76, both hemispheres 19.3
2828 Female, age 72, unknown 19.0
1870 Female, age 42, unknown 18.3
1833 Male, age 53, unknown 17.2
1830 Male, age 51, unknown 16.2
2586 Male, age 75, left hemisphere 15.8
Dorsal raphe nucleus
nTPM: 19.0
2298 Female, age 72, unknown 22.1
1828 Male, age 53, unknown 20.7
2750 Male, age 76, both hemispheres 18.9
2047 Male, age 72, unknown 18.4
2016 Female, age 72, unknown 14.8
Inferior colliculus
nTPM: 18.5
2097 Female, age 72, unknown 22.2
1848 Female, age 42, unknown 18.0
1890 Male, age 53, unknown 17.7
2849 Male, age 72, unknown 16.0
Median raphe nucleus
nTPM: 23.1
2220 Male, age 76, midline 23.1
Pedunculopontine tegmental nucleus
nTPM: 25.6
2334 Male, age 80, both hemispheres 27.5
2338 Male, age 61, both hemispheres 26.8
1921 Female, age 85, both hemispheres 22.5
Periaquaductal grey, anterior
nTPM: 19.3
1795 Male, age 51, unknown 21.0
1947 Male, age 18, unknown 19.0
2502 Female, age 75, unknown 18.0
Periaquaductal grey, dorsal
nTPM: 16.0
1831 Male, age 72, unknown 17.8
2464 Female, age 72, unknown 16.7
1840 Male, age 53, unknown 15.9
2850 Male, age 76, both hemispheres 13.8
Periaquaductal grey, lateral
nTPM: 15.6
2272 Male, age 74, both hemispheres 17.3
2053 Male, age 18, unknown 16.2
2140 Male, age 76, both hemispheres 13.4
Pretectal area
nTPM: 21.6
1816 Male, age 51, unknown 30.5
1817 Female, age 42, unknown 29.9
2007 Male, age 72, unknown 28.4
1944 Female, age 72, unknown 25.5
1815 Male, age 53, unknown 22.2
2224 Female, age 72, unknown 20.8
2667 Female, age 75, unknown 17.5
2825 Male, age 18, unknown 17.4
2316 Male, age 76, right hemisphere 16.5
2407 Male, age 75, both hemispheres 14.5
2273 Male, age 74, both hemispheres 14.0
Red nucleus
nTPM: 16.9
2588 Male, age 74, left hemisphere 21.5
2785 Male, age 18, unknown 20.8
1821 Female, age 72, unknown 19.5
2725 Female, age 75, unknown 18.5
2584 Male, age 75, left hemisphere 17.7
2823 Male, age 76, right hemisphere 17.3
1954 Female, age 42, unknown 15.3
2503 Female, age 72, unknown 15.1
2769 Male, age 72, unknown 14.5
1904 Male, age 53, unknown 14.4
2227 Male, age 72, unknown 14.4
1865 Male, age 51, unknown 14.1
Substantia nigra
nTPM: 21.0
1916 Female, age 42, unknown 24.9
2241 Male, age 72, unknown 23.9
1889 Female, age 72, unknown 23.4
1941 Male, age 53, unknown 22.7
2409 Female, age 72, unknown 21.6
2665 Male, age 74, both hemispheres 21.4
1851 Male, age 51, unknown 20.7
2590 Female, age 75, unknown 18.9
2583 Male, age 75, right hemisphere 18.2
2699 Male, age 18, unknown 14.3
Superior colliculus
nTPM: 18.3
2087 Female, age 72, unknown 23.9
2668 Female, age 75, unknown 22.2
2261 Male, age 18, unknown 21.2
1796 Male, age 53, unknown 20.5
1839 Male, age 51, unknown 18.3
2587 Male, age 74, left hemisphere 17.8
1895 Male, age 76, right hemisphere 16.7
1913 Female, age 42, unknown 15.8
1995 Male, age 72, unknown 14.0
2664 Male, age 75, both hemispheres 12.5
Ventral tegmental area
nTPM: 19.6
1915 Female, age 42, unknown 21.8
2410 Female, age 72, unknown 21.3
2218 Male, age 76, both hemispheres 19.6
2021 Male, age 53, unknown 18.6
2223 Female, age 72, unknown 18.4
1942 Male, age 51, unknown 17.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.6
Samples: 139

Max nTPM: 129.7
Min nTPM: 2.6
Std nTPM: 18.5
Median nTPM: 20.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 129.7
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 78.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 73.2
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 72.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 71.9
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 70.8
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 67.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 66.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 58.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 57.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 56.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 78.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 78.8
FF:10158-103A5 76 years, female 78.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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