BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:3.1 nTPM
HPA:3.1 nTPM
GTEx:4.1 nTPM
FANTOM5:18.9 Scaled Tags Per Million
Pig:5.9 nTPM
Mouse:0.9 nTPM
Allen mouse:2.9 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.6
1857 Female, age 85, left hemisphere 3.4
2289 Male, age 61, right hemisphere 2.4
1854 Male, age 80, left hemisphere 2.2
2290 Female, age 72, unknown 1.9
2481 Female, age 94, left hemisphere 1.8
1781 Male, age 74, unknown 0.9
2288 Male, age 75, left hemisphere 0.3
2846 Female, age 79, unknown 0.3
Claustrum
nTPM: 0.5
2491 Male, age 75, both hemispheres 1.2
2196 Female, age 79, unknown 0.9
2392 Female, age 94, both hemispheres 0.6
2568 Male, age 61, both hemispheres 0.6
2645 Female, age 72, unknown 0.5
1956 Male, age 74, unknown 0.2
2292 Female, age 85, both hemispheres 0.2
2198 Male, age 80, both hemispheres 0.0
2284 Female, age 91, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.5
2646 Male, age 61, right hemisphere 1.2
2567 Female, age 72, unknown 0.9
1996 Male, age 80, right hemisphere 0.5
2395 Male, age 75, both hemispheres 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.9
2037 Male, age 80, right hemisphere 1.3
2483 Female, age 94, right hemisphere 1.2
2111 Female, age 85, right hemisphere 1.0
2566 Female, age 72, unknown 1.0
1818 Male, age 74, unknown 0.8
2287 Male, age 75, right hemisphere 0.5
2778 Female, age 91, both hemispheres 0.5
Nucleus accumbens
nTPM: 2.3
2824 Male, age 61, right hemisphere 3.7
1806 Female, age 85, left hemisphere 3.5
2732 Male, age 80, right hemisphere 2.4
2391 Female, age 94, left hemisphere 2.2
2698 Female, age 72, unknown 2.2
1856 Female, age 91, right hemisphere 1.8
1783 Male, age 74, unknown 1.5
2286 Male, age 75, left hemisphere 0.8
Nucleus basalis of Meynert
nTPM: 2.2
2821 Male, age 75, both hemispheres 2.4
2484 Female, age 94, left hemisphere 2.3
2569 Male, age 61, both hemispheres 2.1
2393 Male, age 80, right hemisphere 1.9
Nucleus of the diagonal band
nTPM: 1.7
2775 Male, age 80, right hemisphere 2.4
1979 Male, age 74, unknown 1.8
2029 Male, age 61, right hemisphere 1.8
2195 Female, age 85, both hemispheres 1.5
1812 Female, age 91, both hemispheres 0.9
Olfactory tubercle
nTPM: 3.1
2856 Male, age 75, right hemisphere 4.1
2487 Female, age 94, left hemisphere 3.5
1846 Male, age 80, right hemisphere 3.1
1998 Female, age 91, both hemispheres 1.8
Putamen
nTPM: 0.8
1838 Male, age 80, right hemisphere 2.8
2482 Female, age 94, left hemisphere 1.9
1937 Female, age 91, right hemisphere 1.3
1829 Male, age 74, unknown 0.0
2466 Female, age 79, unknown 0.0
2489 Female, age 72, unknown 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 2.5
2199 Male, age 80, right hemisphere 4.5
2059 Female, age 85, both hemispheres 3.8
2394 Male, age 61, left hemisphere 3.7
2629 Female, age 94, right hemisphere 1.8
2009 Female, age 91, both hemispheres 1.4
1960 Male, age 74, unknown 1.1
2031 Female, age 72, unknown 1.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 4.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3.3
Samples: 246

Max nTPM: 6.5
Min nTPM: 1.0
Std nTPM: 1.1
Median nTPM: 3.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 6.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 6.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 6.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 5.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 5.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 5.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 5.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 5.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 5.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 5.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 5.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 4.1
Samples: 246

Max nTPM: 11.2
Min nTPM: 0.9
Std nTPM: 1.3
Median nTPM: 4.0
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 11.2
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 7.4
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 7.2
GTEX-14ASI-0011-R6a-SM-5S2UZ 60-69 years, male 7.1
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 7.0
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 6.9
GTEX-1399T-0011-R6b-SM-5K7YL 60-69 years, male 6.8
GTEX-17JCI-0011-R6a-SM-72D6D 60-69 years, female 6.8
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 6.7
GTEX-ZVZQ-0011-R6b-SM-57WAY 60-69 years, female 6.7
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 6.6
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Brain - Putamen (basal ganglia)
Average nTPM: 2.5
Samples: 205

Max nTPM: 8.6
Min nTPM: 0.7
Std nTPM: 1.1
Median nTPM: 2.3
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 8.6
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 6.2
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 5.9
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 5.4
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 5.1
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 4.8
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 4.8
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 4.6
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 4.6
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 4.6
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 4.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 17.1
FF:10164-103B2 76 years, female 17.1
Globus pallidus
Scaled Tags Per Million: 11.9
FF:10175-103C4 60 years, female 12.6
FF:10161-103A8 76 years, female 11.2
Nucleus accumbens
Scaled Tags Per Million: 13.8
FF:10037-101F1 23-56 years, mixed 13.8
Putamen
Scaled Tags Per Million: 18.9
FF:10176-103C5 60 years, female 18.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.9
Pig sample Sample description nTPM
Caudate
nTPM: 5.9
Samples: 4

Max nTPM: 6.2
Min nTPM: 5.4
Sample A Female 6.2
Sample B Female 5.4
Sample C Male 6.1
Sample D Male 5.8
Putamen
nTPM: 5.3
Samples: 4

Max nTPM: 6.1
Min nTPM: 4.8
Sample A Female 6.1
Sample B Female 5.0
Sample C Male 5.2
Sample D Male 4.8
Septum
nTPM: 5.1
Samples: 4

Max nTPM: 5.7
Min nTPM: 4.9
Sample A Female 4.9
Sample B Female 4.9
Sample C Male 4.9
Sample D Male 5.7
Ventral pallidum
nTPM: 5.3
Samples: 4

Max nTPM: 5.7
Min nTPM: 5.0
Sample A Female 5.7
Sample B Female 5.1
Sample C Male 5.0
Sample D Male 5.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.3
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.1
Sample A Male 0.3
Sample B Male 0.1
Sample C Female 0.5
Sample D Female 0.3
Septum
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.2
Sample A Male 0.2
Sample B Male 0.3
Sample C Female 0.2
Sample D Female 0.2
Ventral forebrain
nTPM: 0.9
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.7
Sample A Male 0.8
Sample B Male 0.9
Sample C Female 0.7
Sample D Female 1.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.7
71064195 Antisense, RP_050725_03_D04, Mouse strain C57BL/6J (56 days, male) 1.8
68797828 Antisense, RP_050215_01_C02, Mouse strain C57BL/6J (56 days, male) 1.7
Pallidum
Expression energy: 2.9
68797828 Antisense, RP_050215_01_C02, Mouse strain C57BL/6J (56 days, male) 3.2
71064195 Antisense, RP_050725_03_D04, Mouse strain C57BL/6J (56 days, male) 2.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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