HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:23.1 nTPM
HPA:23.1 nTPM
GTEx:17.5 nTPM
FANTOM5:25.9 Scaled Tags Per Million
Pig:11.0 nTPM
Mouse:38.0 nTPM
Allen mouse:0.3 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 23.1
Sample id Sample description nTPM
Hippocampus
nTPM: 22.0
1898 Male, age 80, left hemisphere 25.2
2148 Female, age 91, left hemisphere 23.5
2529 Female, age 94, left hemisphere 21.8
1911 Female, age 85, right hemisphere 21.4
2621 Female, age 67, right hemisphere 20.8
1855 Male, age 76, left hemisphere 19.2
Dentate gyrus
nTPM: 22.3
1927 Female, age 91, both hemispheres 26.9
2010 Male, age 76, both hemispheres 25.0
2528 Male, age 74, both hemispheres 22.4
2246 Female, age 85, both hemispheres 21.6
2530 Female, age 94, left hemisphere 20.9
2531 Female, age 67, both hemispheres 17.1
Entorhinal gyrus
nTPM: 20.3
1938 Female, age 85, left hemisphere 23.4
2117 Female, age 91, right hemisphere 21.9
2764 Male, age 80, right hemisphere 20.2
2686 Male, age 75, right hemisphere 20.1
1787 Male, age 76, left hemisphere 18.3
2613 Female, age 94, left hemisphere 18.0
Hippocampus, CA1
nTPM: 23.0
2749 Male, age 80, left hemisphere 28.0
2045 Male, age 76, both hemispheres 24.7
1873 Female, age 85, both hemispheres 24.3
2527 Male, age 74, both hemispheres 20.1
2082 Female, age 91, right hemisphere 18.1
Hippocampus, CA2
nTPM: 23.1
1963 Male, age 80, left hemisphere 29.0
1892 Male, age 76, both hemispheres 24.5
2437 Female, age 94, left hemisphere 22.6
1940 Female, age 85, left hemisphere 21.0
2113 Female, age 91, right hemisphere 20.8
2249 Male, age 74, both hemispheres 20.6
Hippocampus, CA3
nTPM: 20.2
2137 Male, age 80, left hemisphere 23.6
1891 Female, age 85, both hemispheres 23.0
2436 Male, age 74, both hemispheres 22.0
1867 Male, age 76, both hemispheres 17.9
2861 Female, age 67, both hemispheres 17.6
2620 Female, age 94, left hemisphere 17.3
Parahippocampal cortex
nTPM: 21.1
2018 Male, age 76, both hemispheres 25.4
1850 Male, age 80, both hemispheres 25.1
2532 Female, age 72, left hemisphere 23.8
1933 Female, age 85, both hemispheres 22.7
2622 Female, age 67, right hemisphere 20.1
2692 Male, age 74, both hemispheres 20.1
2250 Female, age 67, right hemisphere 19.5
1990 Female, age 91, right hemisphere 18.3
2693 Female, age 94, both hemispheres 18.1
2245 Female, age 91, both hemispheres 18.0
Perirhinal gyrus
nTPM: 22.4
1794 Male, age 80, right hemisphere 25.6
1841 Female, age 85, right hemisphere 25.3
1847 Female, age 91, left hemisphere 23.9
2521 Female, age 94, right hemisphere 19.2
2848 Male, age 76, right hemisphere 18.0
Subiculum
nTPM: 20.4
2729 Female, age 91, right hemisphere 25.6
2438 Female, age 94, left hemisphere 21.0
1977 Female, age 85, both hemispheres 20.2
2042 Male, age 76, both hemispheres 19.2
1901 Male, age 80, both hemispheres 19.1
2619 Male, age 74, both hemispheres 17.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 17.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 17.5
Samples: 197

Max nTPM: 30.1
Min nTPM: 10.0
Std nTPM: 3.9
Median nTPM: 16.9
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 30.1
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 29.1
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 28.7
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 26.6
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 26.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 25.5
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 25.5
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 25.4
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 25.2
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 25.0
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 25.0
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 25.9
FF:10169-103B7 60 years, female 26.1
FF:10153-102I9 76 years, female 25.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 11.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 10.1
Samples: 4

Max nTPM: 10.6
Min nTPM: 9.7
Sample A Female 10.0
Sample B Female 9.7
Sample C Male 10.6
Sample D Male 10.0
Entorhinal cortex
nTPM: 10.8
Samples: 4

Max nTPM: 12.1
Min nTPM: 9.0
Sample A Female 11.4
Sample B Female 10.5
Sample C Male 12.1
Sample D Male 9.0
Subiculum
nTPM: 11.0
Samples: 4

Max nTPM: 11.7
Min nTPM: 10.6
Sample A Female 11.7
Sample B Female 10.6
Sample C Male 10.7
Sample D Male 11.1
Ventral hippocampus
nTPM: 9.5
Samples: 4

Max nTPM: 10.2
Min nTPM: 8.8
Sample A Female 8.8
Sample B Female 9.3
Sample C Male 10.2
Sample D Male 9.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 38.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 26.8
Samples: 4

Max nTPM: 29.8
Min nTPM: 22.5
Sample A Male 29.8
Sample B Male 25.0
Sample C Female 29.7
Sample D Female 22.5
Hippocampal formation
nTPM: 38.0
Samples: 4

Max nTPM: 43.2
Min nTPM: 34.7
Sample A Male 34.7
Sample B Male 36.5
Sample C Female 43.2
Sample D Female 37.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.3
77925715 Antisense, RP_070219_02_A08, Mouse strain C57BL/6J (56 days, male) 0.5
1543 Antisense, RP_Baylor_103260, Mouse strain C57BL/6J (56 days, male) 0.1
77874614 Antisense, RP_070219_02_A08, Mouse strain C57BL/6J (56 days, male) 0.1
1544 Antisense, RP_Baylor_103260, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.