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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:159.7 nTPM
HPA:159.7 nTPM
GTEx:195.7 nTPM
FANTOM5:185.5 Scaled Tags Per Million
Pig:67.3 nTPM
Mouse:51.3 nTPM
Allen mouse:3.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 159.7
Sample id Sample description nTPM
Amygdala
nTPM: 159.7
2814 Male, age 76, right hemisphere 168.2
2514 Male, age 75, right hemisphere 160.7
1987 Female, age 91, left hemisphere 159.9
2695 Female, age 67, right hemisphere 158.6
2517 Female, age 94, left hemisphere 151.2
Basal amygdala
nTPM: 151.7
2609 Male, age 75, right hemisphere 161.1
1955 Male, age 76, both hemispheres 159.1
2243 Female, age 91, right hemisphere 153.9
2110 Male, age 80, left hemisphere 149.3
2685 Female, age 94, left hemisphere 147.7
2827 Female, age 67, right hemisphere 138.9
Central amygdala
nTPM: 152.5
1905 Male, age 76, both hemispheres 162.1
2515 Male, age 75, right hemisphere 150.7
2701 Female, age 91, right hemisphere 150.6
2239 Male, age 80, left hemisphere 149.6
2826 Female, age 94, left hemisphere 149.5
Corticomedial amygdala
nTPM: 153.9
2428 Male, age 75, right hemisphere 157.8
2829 Male, age 80, left hemisphere 157.6
2242 Female, age 91, right hemisphere 156.5
2240 Male, age 76, both hemispheres 155.5
2429 Female, age 94, left hemisphere 154.8
2535 Female, age 67, right hemisphere 141.6
Lateral amygdala
nTPM: 149.4
1883 Male, age 76, both hemispheres 159.6
2516 Male, age 75, right hemisphere 156.6
2534 Female, age 94, left hemisphere 151.7
2255 Female, age 91, right hemisphere 145.8
2256 Male, age 80, left hemisphere 145.6
2830 Female, age 67, right hemisphere 137.3
Stria terminalis, bed nucleus
nTPM: 153.6
1974 Female, age 91, both hemispheres 161.3
2201 Male, age 74, unknown 150.1
2486 Female, age 94, both hemispheres 149.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 195.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 195.7
Samples: 152

Max nTPM: 546.6
Min nTPM: 106.1
Std nTPM: 68.2
Median nTPM: 179.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 546.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 512.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 492.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 438.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 334.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 329.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 320.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 314.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 300.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 288.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 288.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 286.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 285.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 284.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 283.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 278.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 263.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 260.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 251.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 247.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 239.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 239.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 239.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 238.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 235.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 233.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 233.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 232.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 231.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 223.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 220.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 219.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 218.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 217.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 215.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 215.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 215.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 214.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 213.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 213.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 211.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 210.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 209.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 207.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 207.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 206.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 204.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 203.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 203.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 202.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 202.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 200.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 200.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 200.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 200.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 199.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 199.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 198.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 197.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 197.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 196.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 194.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 192.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 190.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 189.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 189.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 188.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 186.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 186.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 183.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 183.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 181.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 180.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 180.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 180.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 179.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 179.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 177.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 175.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 175.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 174.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 174.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 174.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 173.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 172.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 172.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 171.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 171.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 170.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 170.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 170.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 169.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 169.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 168.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 167.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 167.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 166.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 165.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 165.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 165.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 164.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 164.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 163.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 163.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 160.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 160.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 159.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 159.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 159.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 158.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 157.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 154.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 153.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 152.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 152.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 152.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 152.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 151.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 151.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 151.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 151.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 150.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 150.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 150.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 149.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 148.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 146.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 145.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 144.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 143.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 142.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 142.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 142.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 139.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 138.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 137.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 134.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 133.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 131.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 130.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 130.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 129.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 128.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 127.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 124.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 124.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 123.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 122.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 121.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 116.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 116.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 106.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 185.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 185.5
FF:10151-102I7 76 years, female 185.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 67.3
Pig sample Sample description nTPM
Amygdala
nTPM: 67.3
Samples: 4

Max nTPM: 93.1
Min nTPM: 56.8
Sample A Female 93.1
Sample B Female 61.7
Sample C Male 57.6
Sample D Male 56.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 51.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 51.3
Samples: 4

Max nTPM: 55.9
Min nTPM: 44.6
Sample A Male 44.6
Sample B Male 55.9
Sample C Female 53.8
Sample D Female 50.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.1
68745006 Antisense, RP_050210_01_A12, Mouse strain C57BL/6J (56 days, male) 3.1

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