MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:56.2 nTPM
HPA:56.2 nTPM
GTEx:54.6 nTPM
FANTOM5:98.5 Scaled Tags Per Million
Pig:47.9 nTPM
Mouse:36.3 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.2
2019 Male, age 18, unknown 62.0
2411 Female, age 72, unknown 57.7
1830 Male, age 51, unknown 57.2
1870 Female, age 42, unknown 57.0
1833 Male, age 53, unknown 55.5
2828 Female, age 72, unknown 51.4
1827 Male, age 72, unknown 50.2
2666 Male, age 74, left hemisphere 49.0
2219 Male, age 76, both hemispheres 47.1
2586 Male, age 75, left hemisphere 45.3
Dorsal raphe nucleus
nTPM: 52.9
2750 Male, age 76, both hemispheres 56.1
1828 Male, age 53, unknown 54.4
2298 Female, age 72, unknown 51.8
2016 Female, age 72, unknown 51.3
2047 Male, age 72, unknown 50.9
Inferior colliculus
nTPM: 50.7
2097 Female, age 72, unknown 51.9
1848 Female, age 42, unknown 51.7
1890 Male, age 53, unknown 50.5
2849 Male, age 72, unknown 48.8
Median raphe nucleus
nTPM: 49.9
2220 Male, age 76, midline 49.9
Pedunculopontine tegmental nucleus
nTPM: 51.8
2334 Male, age 80, both hemispheres 54.4
1921 Female, age 85, both hemispheres 51.5
2338 Male, age 61, both hemispheres 49.4
Periaquaductal grey, anterior
nTPM: 50.6
2502 Female, age 75, unknown 54.4
1947 Male, age 18, unknown 48.9
1795 Male, age 51, unknown 48.5
Periaquaductal grey, dorsal
nTPM: 48.1
2464 Female, age 72, unknown 50.6
2850 Male, age 76, both hemispheres 49.7
1831 Male, age 72, unknown 46.3
1840 Male, age 53, unknown 45.8
Periaquaductal grey, lateral
nTPM: 50.5
2272 Male, age 74, both hemispheres 54.3
2140 Male, age 76, both hemispheres 49.0
2053 Male, age 18, unknown 48.3
Pretectal area
nTPM: 51.7
2273 Male, age 74, both hemispheres 55.9
2007 Male, age 72, unknown 55.2
1944 Female, age 72, unknown 52.9
1817 Female, age 42, unknown 52.7
1815 Male, age 53, unknown 52.6
2316 Male, age 76, right hemisphere 51.5
1816 Male, age 51, unknown 50.8
2224 Female, age 72, unknown 50.4
2667 Female, age 75, unknown 49.4
2825 Male, age 18, unknown 49.3
2407 Male, age 75, both hemispheres 47.9
Red nucleus
nTPM: 56.2
2785 Male, age 18, unknown 61.9
1865 Male, age 51, unknown 59.3
1821 Female, age 72, unknown 59.2
2823 Male, age 76, right hemisphere 58.4
1904 Male, age 53, unknown 58.0
2503 Female, age 72, unknown 56.7
1954 Female, age 42, unknown 56.6
2725 Female, age 75, unknown 56.5
2227 Male, age 72, unknown 56.4
2769 Male, age 72, unknown 56.3
2588 Male, age 74, left hemisphere 48.4
2584 Male, age 75, left hemisphere 46.8
Substantia nigra
nTPM: 51.5
2409 Female, age 72, unknown 55.9
1889 Female, age 72, unknown 53.9
1851 Male, age 51, unknown 53.1
2241 Male, age 72, unknown 52.2
1941 Male, age 53, unknown 51.0
2665 Male, age 74, both hemispheres 51.0
2590 Female, age 75, unknown 50.8
1916 Female, age 42, unknown 50.0
2583 Male, age 75, right hemisphere 49.4
2699 Male, age 18, unknown 47.7
Superior colliculus
nTPM: 51.8
1913 Female, age 42, unknown 57.5
1895 Male, age 76, right hemisphere 55.2
1995 Male, age 72, unknown 55.2
2587 Male, age 74, left hemisphere 54.4
2261 Male, age 18, unknown 50.2
2087 Female, age 72, unknown 50.1
1839 Male, age 51, unknown 50.0
2668 Female, age 75, unknown 50.0
1796 Male, age 53, unknown 49.7
2664 Male, age 75, both hemispheres 45.8
Ventral tegmental area
nTPM: 53.0
2223 Female, age 72, unknown 58.4
2410 Female, age 72, unknown 57.0
2218 Male, age 76, both hemispheres 51.6
2021 Male, age 53, unknown 51.2
1915 Female, age 42, unknown 50.5
1942 Male, age 51, unknown 49.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 54.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 54.6
Samples: 139

Max nTPM: 106.2
Min nTPM: 27.5
Std nTPM: 15.5
Median nTPM: 50.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 106.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 100.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 93.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 88.2
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 86.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 86.3
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 85.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 84.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 84.1
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 81.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 81.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 98.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 98.5
FF:10158-103A5 76 years, female 98.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 47.9
Pig sample Sample description nTPM
Midbrain
nTPM: 47.9
Samples: 4

Max nTPM: 78.8
Min nTPM: 29.8
Sample A Female 78.8
Sample B Female 35.1
Sample C Male 48.0
Sample D Male 29.8
Periaqueductal gray
nTPM: 32.5
Samples: 3

Max nTPM: 33.8
Min nTPM: 31.2
Sample B Female 32.4
Sample C Male 33.8
Sample D Male 31.2
Substantia nigra
nTPM: 44.7
Samples: 4

Max nTPM: 53.3
Min nTPM: 41.1
Sample A Female 53.3
Sample B Female 42.8
Sample C Male 41.6
Sample D Male 41.1
Superior colliculi
nTPM: 39.5
Samples: 4

Max nTPM: 44.1
Min nTPM: 31.4
Sample A Female 42.3
Sample B Female 31.4
Sample C Male 44.1
Sample D Male 40.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.3
Samples: 4

Max nTPM: 39.3
Min nTPM: 33.0
Sample A Male 33.0
Sample B Male 39.3
Sample C Female 37.8
Sample D Female 35.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
831 Antisense, RP_Baylor_102977, Mouse strain C57BL/6J (56 days, male) 0.0
830 Antisense, RP_Baylor_102977, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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