BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:102.8 nTPM
HPA:102.8 nTPM
GTEx:188.4 nTPM
FANTOM5:173.3 Scaled Tags Per Million
Pig:87.7 nTPM
Mouse:83.2 nTPM
Allen mouse:12.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA003878
Glial cells High
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 102.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 85.2
2290 Female, age 72, unknown 105.7
2846 Female, age 79, unknown 98.1
1781 Male, age 74, unknown 95.5
1857 Female, age 85, left hemisphere 92.6
1854 Male, age 80, left hemisphere 90.8
2289 Male, age 61, right hemisphere 86.0
2288 Male, age 75, left hemisphere 66.3
2481 Female, age 94, left hemisphere 46.6
Claustrum
nTPM: 85.1
2645 Female, age 72, unknown 108.5
2568 Male, age 61, both hemispheres 106.7
2284 Female, age 91, both hemispheres 101.1
2491 Male, age 75, both hemispheres 95.9
2198 Male, age 80, both hemispheres 84.1
1956 Male, age 74, unknown 78.0
2196 Female, age 79, unknown 71.5
2392 Female, age 94, both hemispheres 69.7
2292 Female, age 85, both hemispheres 50.0
Globus pallidus, externus
nTPM: 31.1
2646 Male, age 61, right hemisphere 41.8
2567 Female, age 72, unknown 32.1
2772 Female, age 79, unknown 29.5
2395 Male, age 75, both hemispheres 28.4
1996 Male, age 80, right hemisphere 23.9
Globus pallidus, internus
nTPM: 26.6
2483 Female, age 94, right hemisphere 39.5
2566 Female, age 72, unknown 29.3
1818 Male, age 74, unknown 26.2
2111 Female, age 85, right hemisphere 24.3
2037 Male, age 80, right hemisphere 22.5
2778 Female, age 91, both hemispheres 22.5
2287 Male, age 75, right hemisphere 22.1
Nucleus accumbens
nTPM: 78.3
1783 Male, age 74, unknown 108.4
1856 Female, age 91, right hemisphere 100.3
2824 Male, age 61, right hemisphere 94.3
1806 Female, age 85, left hemisphere 87.6
2698 Female, age 72, unknown 69.6
2286 Male, age 75, left hemisphere 65.5
2732 Male, age 80, right hemisphere 60.0
2391 Female, age 94, left hemisphere 40.4
Nucleus basalis of Meynert
nTPM: 69.2
2393 Male, age 80, right hemisphere 86.5
2484 Female, age 94, left hemisphere 73.1
2821 Male, age 75, both hemispheres 60.9
2569 Male, age 61, both hemispheres 56.3
Nucleus of the diagonal band
nTPM: 95.7
2029 Male, age 61, right hemisphere 122.3
1812 Female, age 91, both hemispheres 99.4
2775 Male, age 80, right hemisphere 98.4
2195 Female, age 85, both hemispheres 89.7
1979 Male, age 74, unknown 68.7
Olfactory tubercle
nTPM: 102.8
1998 Female, age 91, both hemispheres 106.8
2856 Male, age 75, right hemisphere 105.3
2487 Female, age 94, left hemisphere 102.5
1846 Male, age 80, right hemisphere 96.7
Putamen
nTPM: 89.3
1838 Male, age 80, right hemisphere 102.3
1829 Male, age 74, unknown 100.3
2489 Female, age 72, unknown 99.0
2466 Female, age 79, unknown 97.0
2647 Male, age 75, left hemisphere 89.4
1937 Female, age 91, right hemisphere 85.3
2482 Female, age 94, left hemisphere 51.6
Septal nuclei
nTPM: 83.3
1960 Male, age 74, unknown 105.9
2031 Female, age 72, unknown 96.1
2009 Female, age 91, both hemispheres 89.8
2629 Female, age 94, right hemisphere 83.5
2059 Female, age 85, both hemispheres 82.8
2394 Male, age 61, left hemisphere 66.2
2199 Male, age 80, right hemisphere 58.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 188.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 163.6
Samples: 246

Max nTPM: 358.6
Min nTPM: 23.3
Std nTPM: 77.9
Median nTPM: 157.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 358.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 358.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 354.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 352.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 347.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 343.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 341.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 330.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 314.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 309.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 307.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 188.4
Samples: 246

Max nTPM: 399.5
Min nTPM: 21.2
Std nTPM: 76.2
Median nTPM: 195.9
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 399.5
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 376.7
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 355.1
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 345.5
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 337.4
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 330.0
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 329.3
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 327.5
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 324.5
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 318.5
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 317.1
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Brain - Putamen (basal ganglia)
Average nTPM: 165.5
Samples: 205

Max nTPM: 394.4
Min nTPM: 23.9
Std nTPM: 88.4
Median nTPM: 165.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 394.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 383.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 376.7
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 372.3
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 371.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 369.4
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 359.8
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 344.0
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 343.2
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 341.7
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 332.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 173.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 168.7
FF:10164-103B2 76 years, female 168.7
Globus pallidus
Scaled Tags Per Million: 39.2
FF:10175-103C4 60 years, female 49.7
FF:10161-103A8 76 years, female 28.7
Nucleus accumbens
Scaled Tags Per Million: 173.3
FF:10037-101F1 23-56 years, mixed 173.3
Putamen
Scaled Tags Per Million: 172.7
FF:10176-103C5 60 years, female 172.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 87.7
Pig sample Sample description nTPM
Caudate
nTPM: 87.7
Samples: 4

Max nTPM: 110.6
Min nTPM: 57.1
Sample A Female 57.1
Sample B Female 95.5
Sample C Male 110.6
Sample D Male 87.5
Putamen
nTPM: 76.0
Samples: 4

Max nTPM: 99.7
Min nTPM: 31.3
Sample A Female 31.3
Sample B Female 90.4
Sample C Male 99.7
Sample D Male 82.7
Septum
nTPM: 41.0
Samples: 4

Max nTPM: 56.4
Min nTPM: 22.7
Sample A Female 55.6
Sample B Female 56.4
Sample C Male 29.1
Sample D Male 22.7
Ventral pallidum
nTPM: 57.7
Samples: 4

Max nTPM: 68.7
Min nTPM: 45.0
Sample A Female 61.5
Sample B Female 68.7
Sample C Male 45.0
Sample D Male 55.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 83.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 83.3
Samples: 4

Max nTPM: 89.3
Min nTPM: 76.7
Sample A Male 76.7
Sample B Male 88.0
Sample C Female 79.0
Sample D Female 89.3
Septum
nTPM: 60.3
Samples: 4

Max nTPM: 66.3
Min nTPM: 56.0
Sample A Male 61.7
Sample B Male 66.3
Sample C Female 56.0
Sample D Female 57.1
Ventral forebrain
nTPM: 68.1
Samples: 4

Max nTPM: 75.1
Min nTPM: 64.2
Sample A Male 67.1
Sample B Male 64.2
Sample C Female 75.1
Sample D Female 65.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 12.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 12.8
68844313 Antisense, RP_050222_01_D03, Mouse strain C57BL/6J (56 days, male) 12.8
Pallidum
Expression energy: 10.1
68844313 Antisense, RP_050222_01_D03, Mouse strain C57BL/6J (56 days, male) 10.1

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The Human Protein Atlas

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