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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:53.1 nTPM
HPA:53.1 nTPM
GTEx:51.9 nTPM
FANTOM5:111.7 Scaled Tags Per Million
Pig:38.8 nTPM
Mouse:109.8 nTPM
Allen mouse:5.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 53.1
Sample id Sample description nTPM
Amygdala
nTPM: 49.2
2514 Male, age 75, right hemisphere 51.2
2517 Female, age 94, left hemisphere 49.8
2814 Male, age 76, right hemisphere 48.8
2695 Female, age 67, right hemisphere 48.1
1987 Female, age 91, left hemisphere 47.9
Basal amygdala
nTPM: 51.3
2827 Female, age 67, right hemisphere 55.0
2243 Female, age 91, right hemisphere 53.0
2609 Male, age 75, right hemisphere 50.9
2685 Female, age 94, left hemisphere 50.6
2110 Male, age 80, left hemisphere 50.5
1955 Male, age 76, both hemispheres 47.6
Central amygdala
nTPM: 51.0
2701 Female, age 91, right hemisphere 56.4
2239 Male, age 80, left hemisphere 50.6
2826 Female, age 94, left hemisphere 49.4
1905 Male, age 76, both hemispheres 49.2
2515 Male, age 75, right hemisphere 49.2
Corticomedial amygdala
nTPM: 52.7
2242 Female, age 91, right hemisphere 55.6
2429 Female, age 94, left hemisphere 54.1
2535 Female, age 67, right hemisphere 53.9
2240 Male, age 76, both hemispheres 51.2
2829 Male, age 80, left hemisphere 51.0
2428 Male, age 75, right hemisphere 50.2
Lateral amygdala
nTPM: 52.1
2255 Female, age 91, right hemisphere 57.9
2830 Female, age 67, right hemisphere 54.6
2516 Male, age 75, right hemisphere 52.6
2534 Female, age 94, left hemisphere 51.2
2256 Male, age 80, left hemisphere 50.2
1883 Male, age 76, both hemispheres 46.2
Stria terminalis, bed nucleus
nTPM: 53.1
2201 Male, age 74, unknown 54.8
1974 Female, age 91, both hemispheres 52.8
2486 Female, age 94, both hemispheres 51.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 51.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 51.9
Samples: 152

Max nTPM: 83.6
Min nTPM: 29.3
Std nTPM: 10.2
Median nTPM: 50.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 83.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 80.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 78.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 75.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 73.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 72.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 71.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 70.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 69.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 66.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 66.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 65.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 65.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 65.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 65.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 64.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 64.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 64.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 64.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 64.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 63.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 63.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 63.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 63.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 62.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 62.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 62.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 61.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 60.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 60.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 60.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 60.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 60.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 60.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 59.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 59.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 59.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 59.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 59.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 58.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 58.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 57.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 57.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 57.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 57.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 57.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 56.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 56.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 56.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 56.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 56.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 56.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 55.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 54.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 54.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 54.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 54.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 53.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 53.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 53.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 53.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 53.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 53.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 52.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 52.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 52.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 52.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 52.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 52.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 51.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 51.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 51.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 50.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 50.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 50.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 50.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 50.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 50.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 50.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 50.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 49.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 49.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 49.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 49.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 49.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 48.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 48.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 48.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 48.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 48.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 48.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 48.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 48.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 47.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 47.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 47.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 47.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 47.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 47.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 46.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 46.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 46.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 46.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 46.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 46.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 46.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 46.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 46.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 46.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 46.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 45.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 45.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 45.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 45.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 45.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 44.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 44.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 44.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 44.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 44.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 44.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 43.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 43.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 43.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 43.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 43.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 43.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 43.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 43.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 42.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 42.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 42.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 41.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 41.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 41.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 40.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 40.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 39.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 39.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 38.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 38.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 36.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 36.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 36.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 35.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 35.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 35.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 34.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 33.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 30.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 29.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 29.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 111.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 111.7
FF:10151-102I7 76 years, female 111.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 38.8
Pig sample Sample description nTPM
Amygdala
nTPM: 38.8
Samples: 4

Max nTPM: 50.4
Min nTPM: 33.8
Sample A Female 50.4
Sample B Female 34.6
Sample C Male 33.8
Sample D Male 36.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 109.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 109.8
Samples: 4

Max nTPM: 120.9
Min nTPM: 90.3
Sample A Male 119.9
Sample B Male 120.9
Sample C Female 90.3
Sample D Female 107.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 5.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.3
69170240 Antisense, RP_050321_04_G11, Mouse strain C57BL/6J (56 days, male) 8.8
71211608 Antisense, RP_050816_01_H09, Mouse strain C57BL/6J (56 days, male) 1.7

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