MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:87.8 nTPM
HPA:87.8 nTPM
GTEx:84.1 nTPM
FANTOM5:210.8 Scaled Tags Per Million
Pig:236.4 nTPM
Mouse:41.2 nTPM
Allen mouse:5.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 87.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 83.7
1870 Female, age 42, unknown 92.7
2586 Male, age 75, left hemisphere 90.2
2019 Male, age 18, unknown 87.2
2411 Female, age 72, unknown 86.6
1833 Male, age 53, unknown 84.0
1830 Male, age 51, unknown 83.9
1827 Male, age 72, unknown 81.0
2666 Male, age 74, left hemisphere 81.0
2828 Female, age 72, unknown 78.4
2219 Male, age 76, both hemispheres 71.5
Dorsal raphe nucleus
nTPM: 77.6
2016 Female, age 72, unknown 85.7
2750 Male, age 76, both hemispheres 81.3
1828 Male, age 53, unknown 78.7
2298 Female, age 72, unknown 72.6
2047 Male, age 72, unknown 69.8
Inferior colliculus
nTPM: 80.4
2097 Female, age 72, unknown 83.3
2849 Male, age 72, unknown 80.4
1848 Female, age 42, unknown 80.1
1890 Male, age 53, unknown 78.0
Median raphe nucleus
nTPM: 73.8
2220 Male, age 76, midline 73.8
Pedunculopontine tegmental nucleus
nTPM: 77.0
2334 Male, age 80, both hemispheres 83.5
1921 Female, age 85, both hemispheres 75.9
2338 Male, age 61, both hemispheres 71.6
Periaquaductal grey, anterior
nTPM: 81.9
2502 Female, age 75, unknown 89.3
1947 Male, age 18, unknown 82.3
1795 Male, age 51, unknown 74.2
Periaquaductal grey, dorsal
nTPM: 83.8
2850 Male, age 76, both hemispheres 84.6
2464 Female, age 72, unknown 84.1
1831 Male, age 72, unknown 83.4
1840 Male, age 53, unknown 83.0
Periaquaductal grey, lateral
nTPM: 76.5
2053 Male, age 18, unknown 81.5
2140 Male, age 76, both hemispheres 78.0
2272 Male, age 74, both hemispheres 70.0
Pretectal area
nTPM: 83.2
1815 Male, age 53, unknown 89.7
1816 Male, age 51, unknown 86.9
2407 Male, age 75, both hemispheres 86.9
1817 Female, age 42, unknown 86.7
1944 Female, age 72, unknown 82.4
2316 Male, age 76, right hemisphere 82.3
2273 Male, age 74, both hemispheres 81.7
2667 Female, age 75, unknown 81.0
2007 Male, age 72, unknown 80.6
2825 Male, age 18, unknown 78.9
2224 Female, age 72, unknown 78.0
Red nucleus
nTPM: 87.8
1821 Female, age 72, unknown 95.4
2503 Female, age 72, unknown 94.9
1954 Female, age 42, unknown 91.7
1904 Male, age 53, unknown 91.0
1865 Male, age 51, unknown 90.2
2785 Male, age 18, unknown 87.8
2227 Male, age 72, unknown 87.6
2823 Male, age 76, right hemisphere 85.8
2769 Male, age 72, unknown 84.2
2588 Male, age 74, left hemisphere 83.8
2584 Male, age 75, left hemisphere 80.6
2725 Female, age 75, unknown 80.4
Substantia nigra
nTPM: 79.6
2241 Male, age 72, unknown 85.7
2409 Female, age 72, unknown 84.2
2590 Female, age 75, unknown 81.3
2583 Male, age 75, right hemisphere 80.7
1889 Female, age 72, unknown 80.5
1851 Male, age 51, unknown 80.1
1941 Male, age 53, unknown 79.2
2699 Male, age 18, unknown 77.9
2665 Male, age 74, both hemispheres 77.5
1916 Female, age 42, unknown 68.7
Superior colliculus
nTPM: 86.5
1995 Male, age 72, unknown 99.0
1913 Female, age 42, unknown 96.8
2664 Male, age 75, both hemispheres 94.1
1839 Male, age 51, unknown 86.6
2668 Female, age 75, unknown 86.1
2587 Male, age 74, left hemisphere 84.2
2261 Male, age 18, unknown 82.0
1895 Male, age 76, right hemisphere 80.0
2087 Female, age 72, unknown 79.8
1796 Male, age 53, unknown 76.7
Ventral tegmental area
nTPM: 79.4
2223 Female, age 72, unknown 85.8
2410 Female, age 72, unknown 81.8
2021 Male, age 53, unknown 81.0
1942 Male, age 51, unknown 79.7
1915 Female, age 42, unknown 75.2
2218 Male, age 76, both hemispheres 73.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 84.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 84.1
Samples: 139

Max nTPM: 159.5
Min nTPM: 44.2
Std nTPM: 21.2
Median nTPM: 79.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 159.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 139.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 137.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 131.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 127.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 123.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 121.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 121.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 120.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 118.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 116.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 210.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 210.8
FF:10158-103A5 76 years, female 210.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 236.4
Pig sample Sample description nTPM
Midbrain
nTPM: 236.4
Samples: 4

Max nTPM: 334.6
Min nTPM: 189.4
Sample A Female 334.6
Sample B Female 209.0
Sample C Male 212.6
Sample D Male 189.4
Periaqueductal gray
nTPM: 204.4
Samples: 3

Max nTPM: 210.3
Min nTPM: 198.3
Sample B Female 198.3
Sample C Male 210.3
Sample D Male 204.5
Substantia nigra
nTPM: 212.2
Samples: 4

Max nTPM: 238.0
Min nTPM: 199.7
Sample A Female 238.0
Sample B Female 199.7
Sample C Male 206.1
Sample D Male 204.8
Superior colliculi
nTPM: 214.5
Samples: 4

Max nTPM: 247.7
Min nTPM: 174.1
Sample A Female 247.7
Sample B Female 174.1
Sample C Male 215.9
Sample D Male 220.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 41.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 41.2
Samples: 4

Max nTPM: 42.6
Min nTPM: 39.2
Sample A Male 39.2
Sample B Male 42.6
Sample C Female 42.1
Sample D Female 40.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.4
68162273 Antisense, RP_041122_02_G07, Mouse strain C57BL/6J (56 days, male) 5.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.