MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:66.6 nTPM
HPA:66.6 nTPM
GTEx:76.8 nTPM
FANTOM5:73.9 Scaled Tags Per Million
Pig:91.1 nTPM
Mouse:155.8 nTPM
Allen mouse:6.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 66.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.5
2411 Female, age 72, unknown 67.1
2666 Male, age 74, left hemisphere 66.8
1827 Male, age 72, unknown 63.9
1870 Female, age 42, unknown 61.3
2219 Male, age 76, both hemispheres 60.0
2019 Male, age 18, unknown 58.7
1833 Male, age 53, unknown 58.5
2828 Female, age 72, unknown 57.3
1830 Male, age 51, unknown 56.8
2586 Male, age 75, left hemisphere 54.5
Dorsal raphe nucleus
nTPM: 63.7
2298 Female, age 72, unknown 68.2
2047 Male, age 72, unknown 66.0
2750 Male, age 76, both hemispheres 63.3
1828 Male, age 53, unknown 63.1
2016 Female, age 72, unknown 57.7
Inferior colliculus
nTPM: 59.5
2097 Female, age 72, unknown 62.5
1848 Female, age 42, unknown 60.0
1890 Male, age 53, unknown 59.5
2849 Male, age 72, unknown 56.0
Median raphe nucleus
nTPM: 63.1
2220 Male, age 76, midline 63.1
Pedunculopontine tegmental nucleus
nTPM: 66.6
2334 Male, age 80, both hemispheres 69.2
2338 Male, age 61, both hemispheres 67.6
1921 Female, age 85, both hemispheres 63.0
Periaquaductal grey, anterior
nTPM: 59.5
1947 Male, age 18, unknown 67.6
1795 Male, age 51, unknown 58.4
2502 Female, age 75, unknown 52.6
Periaquaductal grey, dorsal
nTPM: 59.1
2464 Female, age 72, unknown 60.1
1831 Male, age 72, unknown 60.0
2850 Male, age 76, both hemispheres 59.4
1840 Male, age 53, unknown 56.8
Periaquaductal grey, lateral
nTPM: 59.7
2140 Male, age 76, both hemispheres 62.0
2053 Male, age 18, unknown 61.3
2272 Male, age 74, both hemispheres 55.9
Pretectal area
nTPM: 61.5
1944 Female, age 72, unknown 72.4
1816 Male, age 51, unknown 66.8
1817 Female, age 42, unknown 64.2
2224 Female, age 72, unknown 62.7
2007 Male, age 72, unknown 62.2
1815 Male, age 53, unknown 60.9
2825 Male, age 18, unknown 59.2
2273 Male, age 74, both hemispheres 58.0
2667 Female, age 75, unknown 57.7
2316 Male, age 76, right hemisphere 56.5
2407 Male, age 75, both hemispheres 56.2
Red nucleus
nTPM: 58.1
2584 Male, age 75, left hemisphere 65.2
1821 Female, age 72, unknown 61.1
2823 Male, age 76, right hemisphere 60.6
2725 Female, age 75, unknown 59.7
1904 Male, age 53, unknown 59.4
1954 Female, age 42, unknown 59.4
2785 Male, age 18, unknown 57.8
2769 Male, age 72, unknown 57.5
1865 Male, age 51, unknown 56.3
2503 Female, age 72, unknown 54.4
2227 Male, age 72, unknown 53.8
2588 Male, age 74, left hemisphere 52.2
Substantia nigra
nTPM: 65.3
2241 Male, age 72, unknown 73.3
1941 Male, age 53, unknown 70.8
2590 Female, age 75, unknown 69.9
1916 Female, age 42, unknown 68.6
1851 Male, age 51, unknown 66.2
1889 Female, age 72, unknown 65.6
2583 Male, age 75, right hemisphere 61.6
2409 Female, age 72, unknown 61.3
2699 Male, age 18, unknown 58.0
2665 Male, age 74, both hemispheres 57.5
Superior colliculus
nTPM: 60.9
2087 Female, age 72, unknown 66.5
2668 Female, age 75, unknown 66.5
1796 Male, age 53, unknown 62.4
1839 Male, age 51, unknown 61.6
1895 Male, age 76, right hemisphere 61.2
2587 Male, age 74, left hemisphere 61.2
2261 Male, age 18, unknown 61.1
1913 Female, age 42, unknown 57.4
1995 Male, age 72, unknown 56.2
2664 Male, age 75, both hemispheres 55.4
Ventral tegmental area
nTPM: 63.4
2410 Female, age 72, unknown 73.4
1915 Female, age 42, unknown 65.3
1942 Male, age 51, unknown 61.8
2218 Male, age 76, both hemispheres 60.9
2021 Male, age 53, unknown 59.6
2223 Female, age 72, unknown 59.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 76.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 76.8
Samples: 139

Max nTPM: 181.9
Min nTPM: 31.5
Std nTPM: 25.3
Median nTPM: 72.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 181.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 145.7
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 138.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 137.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 130.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 129.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 129.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 126.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 122.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 122.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 122.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 73.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 73.9
FF:10158-103A5 76 years, female 73.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 91.1
Pig sample Sample description nTPM
Midbrain
nTPM: 56.4
Samples: 4

Max nTPM: 74.3
Min nTPM: 37.2
Sample A Female 70.9
Sample B Female 74.3
Sample C Male 37.2
Sample D Male 43.1
Periaqueductal gray
nTPM: 48.1
Samples: 3

Max nTPM: 58.7
Min nTPM: 40.6
Sample B Female 58.7
Sample C Male 45.0
Sample D Male 40.6
Substantia nigra
nTPM: 74.5
Samples: 4

Max nTPM: 116.4
Min nTPM: 56.5
Sample A Female 63.9
Sample B Female 116.4
Sample C Male 56.5
Sample D Male 61.0
Superior colliculi
nTPM: 91.2
Samples: 4

Max nTPM: 166.3
Min nTPM: 47.1
Sample A Female 102.1
Sample B Female 166.3
Sample C Male 47.1
Sample D Male 49.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 155.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 155.8
Samples: 4

Max nTPM: 160.3
Min nTPM: 150.2
Sample A Male 157.2
Sample B Male 160.3
Sample C Female 155.4
Sample D Female 150.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.8
69526952 Antisense, RP_050421_02_A03, Mouse strain C57BL/6J (56 days, male) 6.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.