MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:27.2 nTPM
HPA:27.2 nTPM
GTEx:17.6 nTPM
FANTOM5:16.5 Scaled Tags Per Million
Pig:21.4 nTPM
Mouse:17.5 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.3
2666 Male, age 74, left hemisphere 29.5
2586 Male, age 75, left hemisphere 29.0
2019 Male, age 18, unknown 27.5
2828 Female, age 72, unknown 26.4
1830 Male, age 51, unknown 25.0
1870 Female, age 42, unknown 24.2
1833 Male, age 53, unknown 23.7
2411 Female, age 72, unknown 23.3
1827 Male, age 72, unknown 22.3
2219 Male, age 76, both hemispheres 22.3
Dorsal raphe nucleus
nTPM: 24.0
2047 Male, age 72, unknown 25.0
2750 Male, age 76, both hemispheres 25.0
1828 Male, age 53, unknown 24.8
2016 Female, age 72, unknown 23.4
2298 Female, age 72, unknown 21.8
Inferior colliculus
nTPM: 23.4
1890 Male, age 53, unknown 26.3
2097 Female, age 72, unknown 23.0
2849 Male, age 72, unknown 22.4
1848 Female, age 42, unknown 21.8
Median raphe nucleus
nTPM: 22.8
2220 Male, age 76, midline 22.8
Pedunculopontine tegmental nucleus
nTPM: 24.1
2334 Male, age 80, both hemispheres 25.0
2338 Male, age 61, both hemispheres 24.0
1921 Female, age 85, both hemispheres 23.2
Periaquaductal grey, anterior
nTPM: 26.6
1947 Male, age 18, unknown 30.4
1795 Male, age 51, unknown 25.2
2502 Female, age 75, unknown 24.1
Periaquaductal grey, dorsal
nTPM: 23.5
2850 Male, age 76, both hemispheres 25.4
1831 Male, age 72, unknown 24.1
2464 Female, age 72, unknown 23.0
1840 Male, age 53, unknown 21.4
Periaquaductal grey, lateral
nTPM: 24.3
2140 Male, age 76, both hemispheres 25.0
2272 Male, age 74, both hemispheres 24.6
2053 Male, age 18, unknown 23.3
Pretectal area
nTPM: 23.1
1817 Female, age 42, unknown 24.5
2007 Male, age 72, unknown 24.2
2316 Male, age 76, right hemisphere 24.2
1815 Male, age 53, unknown 23.7
1944 Female, age 72, unknown 23.4
1816 Male, age 51, unknown 23.2
2224 Female, age 72, unknown 23.1
2667 Female, age 75, unknown 22.5
2825 Male, age 18, unknown 22.5
2407 Male, age 75, both hemispheres 21.9
2273 Male, age 74, both hemispheres 21.0
Red nucleus
nTPM: 27.2
2588 Male, age 74, left hemisphere 34.1
2227 Male, age 72, unknown 28.8
2823 Male, age 76, right hemisphere 27.4
1865 Male, age 51, unknown 27.3
2584 Male, age 75, left hemisphere 27.2
2769 Male, age 72, unknown 27.2
1904 Male, age 53, unknown 27.1
1821 Female, age 72, unknown 26.5
2503 Female, age 72, unknown 25.8
1954 Female, age 42, unknown 25.3
2785 Male, age 18, unknown 25.0
2725 Female, age 75, unknown 24.4
Substantia nigra
nTPM: 25.6
2665 Male, age 74, both hemispheres 32.3
2583 Male, age 75, right hemisphere 26.4
2590 Female, age 75, unknown 26.3
1941 Male, age 53, unknown 26.2
1851 Male, age 51, unknown 26.1
2241 Male, age 72, unknown 25.2
2409 Female, age 72, unknown 23.7
1889 Female, age 72, unknown 23.5
2699 Male, age 18, unknown 23.2
1916 Female, age 42, unknown 23.1
Superior colliculus
nTPM: 23.8
2668 Female, age 75, unknown 28.2
2087 Female, age 72, unknown 25.5
2587 Male, age 74, left hemisphere 24.6
2261 Male, age 18, unknown 24.0
2664 Male, age 75, both hemispheres 23.3
1895 Male, age 76, right hemisphere 23.2
1995 Male, age 72, unknown 23.0
1913 Female, age 42, unknown 22.5
1839 Male, age 51, unknown 22.0
1796 Male, age 53, unknown 21.6
Ventral tegmental area
nTPM: 24.7
1942 Male, age 51, unknown 26.6
2021 Male, age 53, unknown 25.6
2410 Female, age 72, unknown 24.7
2218 Male, age 76, both hemispheres 24.5
2223 Female, age 72, unknown 24.0
1915 Female, age 42, unknown 22.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.6
Samples: 139

Max nTPM: 72.1
Min nTPM: 2.3
Std nTPM: 11.1
Median nTPM: 15.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 72.1
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 57.6
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 51.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 50.3
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 49.3
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 48.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 39.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 38.5
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 37.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 35.3
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 34.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.5
FF:10158-103A5 76 years, female 16.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.4
Pig sample Sample description nTPM
Midbrain
nTPM: 18.8
Samples: 4

Max nTPM: 25.0
Min nTPM: 13.6
Sample A Female 25.0
Sample B Female 13.6
Sample C Male 21.8
Sample D Male 14.7
Periaqueductal gray
nTPM: 8.7
Samples: 3

Max nTPM: 10.0
Min nTPM: 7.4
Sample B Female 10.0
Sample C Male 8.6
Sample D Male 7.4
Substantia nigra
nTPM: 21.4
Samples: 4

Max nTPM: 35.8
Min nTPM: 13.2
Sample A Female 20.0
Sample B Female 35.8
Sample C Male 13.2
Sample D Male 16.6
Superior colliculi
nTPM: 20.1
Samples: 4

Max nTPM: 22.5
Min nTPM: 16.0
Sample A Female 22.5
Sample B Female 16.0
Sample C Male 21.8
Sample D Male 20.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.6
Samples: 4

Max nTPM: 21.8
Min nTPM: 14.3
Sample A Male 17.1
Sample B Male 14.3
Sample C Female 17.0
Sample D Female 21.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
75145999 Antisense, RP_060220_02_B05, Mouse strain C57BL/6J (56 days, male) 2.6
393193 Antisense, RP_040804_02_C01, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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