COLON - Expression summary
Protein expression
Coloni
h
m
l
n
Endothelial cells: Medium
Glandular cells: Medium
Peripheral nerve/ganglion: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:8.4 nTPM
HPA:3.3 nTPM
GTEx:8.4 nTPM
FANTOM5:11.1 Scaled Tags Per Million

COLON - Antibody stainingi
Antibody HPA008703Antibody HPA016046
Endothelial cells LowMedium
Glandular cells MediumMedium
Peripheral nerve/ganglion Not detectedHigh




COLON - HPA RNA-seqi
Average nTPM 3.3
overview
Male, age 54 		Colon sample 67
nTPM: 2.1
Cell types%
Glandular cells:
65

Smooth muscle cells:
10

Other cell types:
25
overview
Female, age 57 		Colon sample 68
nTPM: 2.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55
overview
Male, age 80 		Colon sample 69
nTPM: 1.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40
overview
Male, age 68 		Colon sample 70
nTPM: 2.8
Cell types%
Glandular cells:
35

Smooth muscle cells:
10

Other cell types:
55
overview
Female, age 68 		Colon sample 76
nTPM: 3.1
Cell types%
Glandular cells:
25

Smooth muscle cells:
5

Other cell types:
70
overview
Female, age 61 		Colon sample 299
nTPM: 5.3
Cell types%
Glandular cells:
5

Smooth muscle cells:
65

Other cell types:
30
overview
Male, age 80 		Colon sample 300
nTPM: 2.3
Cell types%
Glandular cells:
15

Smooth muscle cells:
20

Other cell types:
65
overview
Female, age 78 		Colon sample 368
nTPM: 2.8
Cell types%
Glandular cells:
45

Smooth muscle cells:
5

Other cell types:
50
overview
Male, age 84 		Colon sample 381
nTPM: 5.8
Cell types%
Glandular cells:
50

Smooth muscle cells:
15

Other cell types:
35
overview
Male, age 80 		Colon sample 384
nTPM: 2.1
Cell types%
Glandular cells:
20

Smooth muscle cells:
35

Other cell types:
45
overview
Female, age 78 		Colon sample 389
nTPM: 4.1
Cell types%
Glandular cells:
35

Smooth muscle cells:
10

Other cell types:
55
overview
Female, age 69 		Colon sample 391
nTPM: 4.9
Cell types%
Glandular cells:
10

Smooth muscle cells:
45

Other cell types:
45
overview
Female, age 72 		Colon sample 403
nTPM: 4.1
Cell types%
Glandular cells:
20

Smooth muscle cells:
15

Other cell types:
65

COLON - GTEx RNA-seqi
Average nTPM 8.4
GTEx sample id Sample description nTPM
Colon - Sigmoid
Average nTPM: 8.4
Samples: 373

Max nTPM: 15.1
Min nTPM: 1.0
Std nTPM: 2.5
Median nTPM: 8.5
GTEX-1R9K5-2226-SM-DTX9G 50-59 years, male 15.1
GTEX-1LG7Z-1326-SM-DIPF3 30-39 years, male 14.4
GTEX-1LSNM-1426-SM-E6CIH 50-59 years, male 14.4
GTEX-17HGU-2626-SM-79OKN 50-59 years, male 14.3
GTEX-14PK6-1826-SM-69LOM 70-79 years, female 14.2
GTEX-1AYCT-1926-SM-793AE 50-59 years, male 14.2
GTEX-183FY-1426-SM-7DHLM 20-29 years, male 14.1
GTEX-1QW4Y-1426-SM-E76P3 30-39 years, male 13.5
GTEX-1N2DV-1826-SM-E6CJ5 40-49 years, male 13.2
GTEX-1I1CD-2826-SM-A9SL4 60-69 years, female 13.0
GTEX-WHPG-1626-SM-4M1ZL 50-59 years, male 12.7
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Colon - Transverse
Average nTPM: 4.6
Samples: 406

Max nTPM: 14.7
Min nTPM: 0.3
Std nTPM: 3.2
Median nTPM: 3.9
GTEX-1S82U-0726-SM-E9TKI 30-39 years, female 14.7
GTEX-1LBAC-1626-SM-CXZKV 20-29 years, male 13.7
GTEX-15CHC-1626-SM-5ZZWS 60-69 years, female 13.5
GTEX-18QFQ-1526-SM-72D57 30-39 years, male 13.5
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 12.5
GTEX-14H4A-1926-SM-5ZZWN 40-49 years, female 12.4
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 12.1
GTEX-1C64O-2326-SM-73KU8 60-69 years, male 11.8
GTEX-1C2JI-1626-SM-7EPHC 50-59 years, male 11.7
GTEX-ZF29-1726-SM-4WKFV 60-69 years, female 11.3
GTEX-1R9K5-2126-SM-E8VN1 50-59 years, male 11.3
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COLON - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Colon
Scaled Tags Per Million: 11.1
FF:10014-101C5 62,83,84 years, mixed 11.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.