HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:42.1 nTPM
HPA:42.1 nTPM
GTEx:33.0 nTPM
FANTOM5:33.0 Scaled Tags Per Million
Mouse:90.5 nTPM
Allen mouse:10.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA006161Antibody CAB004283
Glial cells LowLow
Neuronal cells MediumLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 42.1
Sample id Sample description nTPM
Hippocampus
nTPM: 40.6
1898 Male, age 80, left hemisphere 43.8
2529 Female, age 94, left hemisphere 41.2
1855 Male, age 76, left hemisphere 41.0
1911 Female, age 85, right hemisphere 39.8
2148 Female, age 91, left hemisphere 39.3
2621 Female, age 67, right hemisphere 38.7
Dentate gyrus
nTPM: 40.2
2010 Male, age 76, both hemispheres 41.9
1927 Female, age 91, both hemispheres 41.6
2528 Male, age 74, both hemispheres 40.4
2531 Female, age 67, both hemispheres 39.3
2530 Female, age 94, left hemisphere 39.2
2246 Female, age 85, both hemispheres 38.7
Entorhinal gyrus
nTPM: 39.7
1938 Female, age 85, left hemisphere 41.8
2117 Female, age 91, right hemisphere 40.9
1787 Male, age 76, left hemisphere 40.7
2764 Male, age 80, right hemisphere 40.6
2613 Female, age 94, left hemisphere 37.2
2686 Male, age 75, right hemisphere 36.7
Hippocampus, CA1
nTPM: 40.9
2749 Male, age 80, left hemisphere 42.2
2527 Male, age 74, both hemispheres 41.6
1873 Female, age 85, both hemispheres 41.3
2045 Male, age 76, both hemispheres 40.4
2082 Female, age 91, right hemisphere 39.2
Hippocampus, CA2
nTPM: 40.7
2249 Male, age 74, both hemispheres 42.5
1892 Male, age 76, both hemispheres 41.6
1963 Male, age 80, left hemisphere 41.5
2113 Female, age 91, right hemisphere 39.9
2437 Female, age 94, left hemisphere 39.6
1940 Female, age 85, left hemisphere 39.4
Hippocampus, CA3
nTPM: 40.8
2436 Male, age 74, both hemispheres 43.3
1867 Male, age 76, both hemispheres 41.7
1891 Female, age 85, both hemispheres 41.3
2137 Male, age 80, left hemisphere 41.2
2620 Female, age 94, left hemisphere 39.3
2861 Female, age 67, both hemispheres 37.7
Parahippocampal cortex
nTPM: 40.1
1850 Male, age 80, both hemispheres 42.5
1933 Female, age 85, both hemispheres 41.9
2250 Female, age 67, right hemisphere 41.1
1990 Female, age 91, right hemisphere 41.0
2532 Female, age 72, left hemisphere 41.0
2018 Male, age 76, both hemispheres 40.5
2245 Female, age 91, both hemispheres 39.4
2693 Female, age 94, both hemispheres 38.9
2692 Male, age 74, both hemispheres 38.3
2622 Female, age 67, right hemisphere 36.2
Perirhinal gyrus
nTPM: 42.1
1841 Female, age 85, right hemisphere 43.3
1794 Male, age 80, right hemisphere 43.2
1847 Female, age 91, left hemisphere 42.8
2521 Female, age 94, right hemisphere 41.2
2848 Male, age 76, right hemisphere 40.3
Subiculum
nTPM: 39.9
1977 Female, age 85, both hemispheres 42.0
1901 Male, age 80, both hemispheres 40.9
2438 Female, age 94, left hemisphere 39.6
2619 Male, age 74, both hemispheres 39.0
2042 Male, age 76, both hemispheres 38.9
2729 Female, age 91, right hemisphere 38.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 33.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 33.0
Samples: 197

Max nTPM: 55.4
Min nTPM: 24.1
Std nTPM: 4.9
Median nTPM: 32.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 55.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 51.6
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 49.9
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 48.8
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 45.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 44.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 43.9
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 43.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 43.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 42.0
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 41.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 33.0
FF:10169-103B7 60 years, female 34.5
FF:10153-102I9 76 years, female 31.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 90.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 82.9
Samples: 4

Max nTPM: 87.4
Min nTPM: 79.3
Sample A Male 80.0
Sample B Male 84.7
Sample C Female 87.4
Sample D Female 79.3
Hippocampal formation
nTPM: 90.6
Samples: 4

Max nTPM: 100.6
Min nTPM: 86.0
Sample A Male 100.6
Sample B Male 86.0
Sample C Female 88.4
Sample D Female 87.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 10.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.8
293262 Antisense, RP_040617_01_A09, Mouse strain C57BL/6J (56 days, male) 11.0
74047878 Antisense, RP_051214_02_B06, Mouse strain C57BL/6J (56 days, male) 10.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.