MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:607.7 nTPM
HPA:607.7 nTPM
GTEx:546.3 nTPM
FANTOM5:503.2 Scaled Tags Per Million
Pig:337.7 nTPM
Mouse:689.9 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 607.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 521.0
2411 Female, age 72, unknown 564.3
1870 Female, age 42, unknown 537.5
2586 Male, age 75, left hemisphere 529.3
1827 Male, age 72, unknown 527.4
2828 Female, age 72, unknown 524.5
2019 Male, age 18, unknown 510.6
1833 Male, age 53, unknown 510.1
2219 Male, age 76, both hemispheres 506.7
2666 Male, age 74, left hemisphere 503.2
1830 Male, age 51, unknown 497.0
Dorsal raphe nucleus
nTPM: 607.7
2298 Female, age 72, unknown 688.0
2047 Male, age 72, unknown 635.5
1828 Male, age 53, unknown 595.6
2016 Female, age 72, unknown 568.1
2750 Male, age 76, both hemispheres 551.3
Inferior colliculus
nTPM: 574.2
2097 Female, age 72, unknown 645.2
1890 Male, age 53, unknown 604.0
1848 Female, age 42, unknown 540.5
2849 Male, age 72, unknown 507.2
Median raphe nucleus
nTPM: 588.9
2220 Male, age 76, midline 588.9
Pedunculopontine tegmental nucleus
nTPM: 568.4
2338 Male, age 61, both hemispheres 572.9
2334 Male, age 80, both hemispheres 566.6
1921 Female, age 85, both hemispheres 565.6
Periaquaductal grey, anterior
nTPM: 542.8
1947 Male, age 18, unknown 555.2
1795 Male, age 51, unknown 552.7
2502 Female, age 75, unknown 520.5
Periaquaductal grey, dorsal
nTPM: 537.7
2850 Male, age 76, both hemispheres 569.9
1840 Male, age 53, unknown 541.5
2464 Female, age 72, unknown 524.7
1831 Male, age 72, unknown 514.8
Periaquaductal grey, lateral
nTPM: 543.2
2272 Male, age 74, both hemispheres 573.3
2140 Male, age 76, both hemispheres 534.6
2053 Male, age 18, unknown 521.6
Pretectal area
nTPM: 538.1
2667 Female, age 75, unknown 593.7
2273 Male, age 74, both hemispheres 589.0
2224 Female, age 72, unknown 576.2
1817 Female, age 42, unknown 548.5
1944 Female, age 72, unknown 545.7
1816 Male, age 51, unknown 533.4
2825 Male, age 18, unknown 527.6
2007 Male, age 72, unknown 521.9
2316 Male, age 76, right hemisphere 502.7
1815 Male, age 53, unknown 498.4
2407 Male, age 75, both hemispheres 482.1
Red nucleus
nTPM: 525.9
1821 Female, age 72, unknown 579.6
1954 Female, age 42, unknown 555.1
2725 Female, age 75, unknown 554.8
2227 Male, age 72, unknown 541.1
2769 Male, age 72, unknown 539.2
2503 Female, age 72, unknown 531.8
1865 Male, age 51, unknown 522.3
1904 Male, age 53, unknown 521.9
2823 Male, age 76, right hemisphere 512.9
2785 Male, age 18, unknown 510.9
2584 Male, age 75, left hemisphere 470.7
2588 Male, age 74, left hemisphere 470.0
Substantia nigra
nTPM: 564.0
1916 Female, age 42, unknown 661.1
1941 Male, age 53, unknown 603.1
2699 Male, age 18, unknown 587.4
1851 Male, age 51, unknown 583.9
2241 Male, age 72, unknown 580.2
1889 Female, age 72, unknown 561.1
2409 Female, age 72, unknown 528.0
2665 Male, age 74, both hemispheres 521.6
2590 Female, age 75, unknown 507.5
2583 Male, age 75, right hemisphere 506.1
Superior colliculus
nTPM: 515.9
2087 Female, age 72, unknown 539.1
2261 Male, age 18, unknown 530.4
1796 Male, age 53, unknown 529.5
1995 Male, age 72, unknown 527.6
1913 Female, age 42, unknown 521.6
2587 Male, age 74, left hemisphere 512.4
1839 Male, age 51, unknown 508.1
2668 Female, age 75, unknown 508.0
2664 Male, age 75, both hemispheres 493.7
1895 Male, age 76, right hemisphere 488.6
Ventral tegmental area
nTPM: 571.2
1915 Female, age 42, unknown 603.0
1942 Male, age 51, unknown 578.2
2410 Female, age 72, unknown 573.8
2223 Female, age 72, unknown 569.1
2218 Male, age 76, both hemispheres 561.6
2021 Male, age 53, unknown 541.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 546.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 546.3
Samples: 139

Max nTPM: 1287.4
Min nTPM: 252.8
Std nTPM: 165.9
Median nTPM: 526.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1287.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1085.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1078.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 961.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 945.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 847.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 835.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 829.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 777.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 771.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 766.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 503.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 503.2
FF:10158-103A5 76 years, female 503.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 337.7
Pig sample Sample description nTPM
Midbrain
nTPM: 337.7
Samples: 4

Max nTPM: 490.3
Min nTPM: 256.7
Sample A Female 490.3
Sample B Female 304.0
Sample C Male 299.7
Sample D Male 256.7
Periaqueductal gray
nTPM: 254.2
Samples: 3

Max nTPM: 287.7
Min nTPM: 210.2
Sample B Female 264.8
Sample C Male 287.7
Sample D Male 210.2
Substantia nigra
nTPM: 322.2
Samples: 4

Max nTPM: 384.3
Min nTPM: 243.2
Sample A Female 384.3
Sample B Female 243.2
Sample C Male 334.8
Sample D Male 326.5
Superior colliculi
nTPM: 337.2
Samples: 4

Max nTPM: 410.7
Min nTPM: 282.6
Sample A Female 410.7
Sample B Female 282.6
Sample C Male 341.3
Sample D Male 314.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 689.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 689.9
Samples: 4

Max nTPM: 727.3
Min nTPM: 650.4
Sample A Male 727.3
Sample B Male 663.0
Sample C Female 650.4
Sample D Female 719.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
74822850 Antisense, RP_050921_03_C01, Mouse strain C57BL/6J (56 days, male) 1.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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