BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:35.1 nTPM
HPA:35.1 nTPM
GTEx:62.6 nTPM
FANTOM5:96.3 Scaled Tags Per Million
Pig:118.1 nTPM
Mouse:67.8 nTPM
Allen mouse:1.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA005803
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 35.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 32.2
2289 Male, age 61, right hemisphere 42.6
2290 Female, age 72, unknown 41.3
1857 Female, age 85, left hemisphere 40.7
1854 Male, age 80, left hemisphere 36.4
2846 Female, age 79, unknown 31.3
2288 Male, age 75, left hemisphere 24.4
1781 Male, age 74, unknown 23.6
2481 Female, age 94, left hemisphere 17.7
Claustrum
nTPM: 11.8
2196 Female, age 79, unknown 19.1
2568 Male, age 61, both hemispheres 17.4
2392 Female, age 94, both hemispheres 11.6
2491 Male, age 75, both hemispheres 11.4
2284 Female, age 91, both hemispheres 10.5
2645 Female, age 72, unknown 10.3
2198 Male, age 80, both hemispheres 9.6
1956 Male, age 74, unknown 8.5
2292 Female, age 85, both hemispheres 8.2
Globus pallidus, externus
nTPM: 9.8
2646 Male, age 61, right hemisphere 17.3
2567 Female, age 72, unknown 9.3
2395 Male, age 75, both hemispheres 8.6
1996 Male, age 80, right hemisphere 7.3
2772 Female, age 79, unknown 6.7
Globus pallidus, internus
nTPM: 9.0
2483 Female, age 94, right hemisphere 15.5
2566 Female, age 72, unknown 9.7
2778 Female, age 91, both hemispheres 8.1
2287 Male, age 75, right hemisphere 7.7
2111 Female, age 85, right hemisphere 7.6
2037 Male, age 80, right hemisphere 7.4
1818 Male, age 74, unknown 7.2
Nucleus accumbens
nTPM: 35.1
2824 Male, age 61, right hemisphere 57.9
1856 Female, age 91, right hemisphere 48.0
1783 Male, age 74, unknown 39.1
1806 Female, age 85, left hemisphere 39.0
2698 Female, age 72, unknown 31.1
2286 Male, age 75, left hemisphere 25.4
2732 Male, age 80, right hemisphere 22.5
2391 Female, age 94, left hemisphere 17.7
Nucleus basalis of Meynert
nTPM: 27.1
2484 Female, age 94, left hemisphere 33.6
2393 Male, age 80, right hemisphere 28.7
2569 Male, age 61, both hemispheres 26.3
2821 Male, age 75, both hemispheres 19.9
Nucleus of the diagonal band
nTPM: 14.1
1979 Male, age 74, unknown 20.7
2029 Male, age 61, right hemisphere 14.8
1812 Female, age 91, both hemispheres 12.4
2195 Female, age 85, both hemispheres 11.3
2775 Male, age 80, right hemisphere 11.2
Olfactory tubercle
nTPM: 11.9
2487 Female, age 94, left hemisphere 14.3
2856 Male, age 75, right hemisphere 12.6
1846 Male, age 80, right hemisphere 10.9
1998 Female, age 91, both hemispheres 9.8
Putamen
nTPM: 32.8
1838 Male, age 80, right hemisphere 43.5
1937 Female, age 91, right hemisphere 39.2
2489 Female, age 72, unknown 37.6
1829 Male, age 74, unknown 32.4
2466 Female, age 79, unknown 28.9
2647 Male, age 75, left hemisphere 26.0
2482 Female, age 94, left hemisphere 22.1
Septal nuclei
nTPM: 13.9
2394 Male, age 61, left hemisphere 20.5
2199 Male, age 80, right hemisphere 15.7
2059 Female, age 85, both hemispheres 15.0
2629 Female, age 94, right hemisphere 11.7
2009 Female, age 91, both hemispheres 11.6
1960 Male, age 74, unknown 11.5
2031 Female, age 72, unknown 11.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 62.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 51.8
Samples: 246

Max nTPM: 94.8
Min nTPM: 10.4
Std nTPM: 18.1
Median nTPM: 52.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 94.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 93.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 91.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 87.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 87.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 86.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 86.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 86.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 86.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 85.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 84.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 62.6
Samples: 246

Max nTPM: 123.8
Min nTPM: 1.4
Std nTPM: 22.9
Median nTPM: 62.8
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 123.8
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 111.8
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 108.7
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 107.5
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 107.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 105.6
GTEX-1GF9V-0011-R6b-SM-CJI2Q 60-69 years, male 104.3
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 104.0
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 101.6
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 100.8
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 100.2
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Brain - Putamen (basal ganglia)
Average nTPM: 52.4
Samples: 205

Max nTPM: 103.5
Min nTPM: 7.8
Std nTPM: 19.2
Median nTPM: 52.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 103.5
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 100.9
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 94.4
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 91.6
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 88.5
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 86.4
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 86.2
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 85.7
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 85.5
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 84.7
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 82.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 96.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 96.3
FF:10164-103B2 76 years, female 96.3
Globus pallidus
Scaled Tags Per Million: 25.1
FF:10175-103C4 60 years, female 28.4
FF:10161-103A8 76 years, female 21.8
Nucleus accumbens
Scaled Tags Per Million: 63.7
FF:10037-101F1 23-56 years, mixed 63.7
Putamen
Scaled Tags Per Million: 88.8
FF:10176-103C5 60 years, female 88.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 118.1
Pig sample Sample description nTPM
Caudate
nTPM: 118.1
Samples: 4

Max nTPM: 155.7
Min nTPM: 82.0
Sample A Female 82.0
Sample B Female 112.0
Sample C Male 155.7
Sample D Male 122.8
Putamen
nTPM: 107.4
Samples: 4

Max nTPM: 148.6
Min nTPM: 40.2
Sample A Female 40.2
Sample B Female 108.9
Sample C Male 148.6
Sample D Male 131.9
Septum
nTPM: 46.5
Samples: 4

Max nTPM: 71.7
Min nTPM: 22.7
Sample A Female 71.7
Sample B Female 63.2
Sample C Male 22.7
Sample D Male 28.5
Ventral pallidum
nTPM: 66.9
Samples: 4

Max nTPM: 99.0
Min nTPM: 29.2
Sample A Female 99.0
Sample B Female 55.4
Sample C Male 29.2
Sample D Male 84.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 67.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 67.9
Samples: 4

Max nTPM: 73.0
Min nTPM: 66.0
Sample A Male 66.2
Sample B Male 73.0
Sample C Female 66.0
Sample D Female 66.2
Septum
nTPM: 26.2
Samples: 4

Max nTPM: 31.7
Min nTPM: 21.3
Sample A Male 25.5
Sample B Male 26.1
Sample C Female 21.3
Sample D Female 31.7
Ventral forebrain
nTPM: 31.3
Samples: 4

Max nTPM: 32.6
Min nTPM: 29.3
Sample A Male 29.3
Sample B Male 32.6
Sample C Female 31.7
Sample D Female 31.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.4
69236957 Antisense, RP_050331_01_E07, Mouse strain C57BL/6J (56 days, male) 2.4
72119652 Antisense, RP_051017_04_B06, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.6
69236957 Antisense, RP_050331_01_E07, Mouse strain C57BL/6J (56 days, male) 1.2
72119652 Antisense, RP_051017_04_B06, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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